GGGenome | Results

2025-04-10 21:20:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

UCRPT01_04cg08_g3 Poncirus trifoliata CTV-challenged cDNA library - AGI Citrus trifoliata cDNA clone UCRPT01_04cg08, mRNA sequence.
CD576522.1:730-749

TTGAGTCCCATTTCATCGGCCATTAATGAG730GAGGACCAACAATCTTGAAATTATGGGGTGGAGCTGTCA

CS00-C1-101-043-C03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY662355.1:197-216

TTGAGTCCCATTTCATCGGCCATTAATGAG197GAGGACCAACAATCTTGAAATTATGGGGTGGAGCTGTCATTGATACGATC

Citrus sinensis genome assembly, chromosome: 6.
OY754323.1:6629880-6629899

TTGAGTCCCATTTCATCGGCCATTAATGAG6629880GAGGACCAACAATCTTGAAATTATGGGGTGGAGCTGTCATTGATACGATC

Polymixis lichenea genome assembly, chromosome: 7.
OX420938.1:12428361-12428380

TACCTTATGGAAAACAATAAAGCTATGCTT12428361GAGGACCAACAATCTTGAAACAGCTAGCTGGGAACAAGTCTTACTATACG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.107 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=TTTCAAGATTGTTGGTCCTC&k=0&no_gap=0&offset=0&limit=50
0.249 | 0.141 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGACCAACAATCTTGAAA&k=0&no_gap=0&offset=0&limit=50
0.252 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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