GGGenome | Results

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2025-04-11 04:07:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Musa acuminata AAA Group Unigene16004_NK1 mRNA sequence.
JV439338.1:1498-1517

AAGAAAGGGCAAGATTGTTAACCCAATTAT1498TTTGACTAGTGCTCCAGCGAAACGAGAGCTGCAACCAACGAGCC

Musa acuminata subsp. malaccensis isolate AA chromosome 1.
CP126370.1:18142180-18142199

TCCGGAGGCTCGTTGGTTGCAGCTCTCATT18142180TCGCTGGAGCACTAGTCAAAATAATTGGGTTAACAATCTTGCCCTTTCTT

Musa acuminata subsp. malaccensis isolate AA chromosome 12.
CP126381.1:18340780-18340799

TCCGGAGGCTCGTTGGTTGCAGCTCTCATT18340780TCGCTGGAGCACTAGTCAAAATAATTGGGTTAACAATCTTGCCCTTTCTT

Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A01.
HG996466.1:10303137-10303156

TCTGGAGGCTCGTTGGTTGCAGCTCTCATT10303137TCGCTGGAGCACTAGTCAAAATAATTGGGTTAACAATCGTGCCCTTTCTT

Musa schizocarpa genome assembly, chromosome: S01.
LS990915.1:11142884-11142903

TCTGGAGGCTCGTTGGTTGCAGCTCTCATT11142884TCGCTGGAGCACTAGTCAAAATAATTGGGTTAACAATCTTGCCCTTTCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.119 | 0.110 | search_plus_done; http://172.18.8.135:50400/match?q=TTTGACTAGTGCTCCAGCGA&k=0&no_gap=0&offset=0&limit=50
0.149 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=TCGCTGGAGCACTAGTCAAA&k=0&no_gap=0&offset=0&limit=49
0.151 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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