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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 17:04:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:2553505-2553527
TCATAGGCTTAAAATATAGGTAAAATATAT2553505TTTGCTCACTCAAATTTATGATCAATTGCAATCTTGTTCAATATCTTAAACAT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:2956299-2956321
TCATAGGCTTAAAATATAGGTAAAATATAT2956299TTTGCTCACTCAAATTTATGATCAATTGCAATCTTGTTCAATATCTTAAACAT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:2743370-2743392
TCATAGGCTTAAAATATAGGTAAAATATAT2743370TTTGCTCACTCAAATTTATGATCAATTGCAATCTTGTTCAATATCTTAAACAT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:3275742-3275764
TCATAGGCTTAAAATATAGGTAAAATATAT3275742TTTGCTCACTCAAATTTATGATCAATTGCAATCTTGTTCAATATCTTAAACAT
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:2991183-2991205
TCATAGGCTTAAAATATAGGTAAAATATAT2991183TTTGCTCACTCAAATTTATGATCAATTGCAATCTTGTTCAATATCTTAAACAT
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:2596290-2596312
TCATAGGCTTAAAATATAGGTAAAATATAT2596290TTTGCTCACTCAAATTTATGATCAATTGCAATCTTGTTCAATATCTTAAACAT
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:2792407-2792429
TCATAGGCTTAAAATATAGGTAAAATATAT2792407TTTGCTCACTCAAATTTATGATCAATTGCAATCTTGTTCAATATCTTAAACAT
Malus domestica genome assembly, chromosome: 16.
OU696692.1:2987230-2987252
TCATAGGCTTAAAATATAGGTAAAATATAT2987230TTTGCTCACTCAAATTTATGATCAATTGCAATCTTGTCCAATATCTTAAACAT
Malus domestica genome assembly, chromosome: 16.
OU744557.1:2990366-2990388
TCATAGGCTTAAAATATAGGTAAAATATAT2990366TTTGCTCACTCAAATTTATGATCAATTGCAATCTTGTCCAATATCTTAAACAT
Malus domestica genome assembly, chromosome: 16.
OU744968.1:2974538-2974560
TCATAGGCTTAAAATATAGGTAAAATATAT2974538TTTGCTCACTCAAATTTATGATCAATTGCAATCTTGTTCAATATCTTAAACAT
Malus domestica genome assembly, chromosome: 16.
OU745006.1:3000588-3000610
TCATAGGCTTAAAATATAGGTAAAATATAT3000588TTTGCTCACTCAAATTTATGATCAATTGCAATCTTGTCCAATATCTTAAACAT
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:3365818-3365840
TCATAGGCTTAAAATATAGGTAAAATATAT3365818TTTGCTCACTCAAATTTATGATCAATTGCAATCTTGTCCAATATCTTAAACAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTTGCTCACTCAAATTTATGATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTGCTCACTCAAATTTATGATC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.101 | 0.093 | search_plus_done; http://172.18.8.135:50400/match?q=TTTGCTCACTCAAATTTATGATC&k=0&no_gap=0&offset=0&limit=50
0.123 | 0.022 | search_minus_done; http://172.18.8.135:50400/match?q=GATCATAAATTTGAGTGAGCAAA&k=0&no_gap=0&offset=0&limit=38
0.124 | 0.000 | cgi_end;

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