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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-13 06:45:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 2671 from patent US 7557201.
GP471674.1:252-271
TTCCTTAGCATGTCATTGGCATAGCTGTGT252TTTGGAGCAGATGTGTGAGCATCAATTTATGTACTTGGTTTGGTGTTTTA
Sequence 20223 from patent US 7557201.
GP489226.1:199-218
TTCCTTAGCATGTCATTGGCATAGCAGTGT199TTTGGAGCAGATGTGTGAGCTTCAATTTGTGTATTTGTTCTGGTGTTTTA
Sequence 21143 from patent US 7557201.
GP490146.1:244-263
TTCCTTAGCATGTCATTGGCATAGCTGTGT244TTTGGAGCAGATGTGTGAGCATCAATTTATGTACTTGGTTTGGTGTTTTA
Sequence 22548 from patent US 7557201.
GP491551.1:80-99
TTCCTTAGCATGTCATTGGCATAGCTGTGT80TTTGGAGCAGATGTGTGAGCATCAATTTATGTACTTGGTTTGGTGTTTTA
GA__Ea0004A08f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0004A08f, mRNA sequence.
BE052450.2:404-423
TTCCTTAGCATGTCATTGGCATAGCAGTGT404TTTGGAGCAGATGTGTGAGCTTCAATTTGTGTATTTGGTTTGGTGTTTTA
GA__Ea0026D23f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0026D23f, mRNA sequence.
BE052576.2:397-416
TTCCTTAGCATGTCATTGGCATAGCAGTGT397TTTGGAGCAGATGTGTGAGCTTCAATTTGTGTATTTGGTTTGGTGTTTTA
GA__Ea0004F11f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0004F11f, mRNA sequence.
BE053847.2:295-314
TTCCTTAGCATGTCATTGGCATAGCAGTGT295TTTGGAGCAGATGTGTGAGCTTCAATTTGCGTATTTGGATTGGAGTTTTA
GA__Eb0024E09f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0024E09f, mRNA sequence.
BF275522.1:581-600
TTCCTTAGCATGTCATTGGCATAGCAGAGT581TTTGGAGCAGATGTGTGAGCCTCAATTCGAGTATCTGGGATGGTGTTTTA
GA__Ed0106G08f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0106G08f, mRNA sequence.
BQ407449.1:274-293
TTCCTTAGCATGTCATTGGCATAGCAGTGT274TTTGGAGCAGATGTGTGAGCTTCAATTTGTGTATTTGGTTTGGTGTTTTA
G.h.fbr-sw07791 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence.
CO498401.1:273-292
TTCCTTAGCATGTCATTGGCATAGCAGTGT273TTTGGAGCAGATGTGTGAGCTTCAATTTGTGTATTTGGTTTGGTGTTTTA
CM055F01 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR457470.1:568-587
TTCCTTAGCATGTCATTGGCATAGCTGTGT568TTTGGAGCAGATGTGTGAGCATCAATTTATGTTCTTGGGTTGGGGGATCA
GH_OVFIB_01-01-20R_H05_InvR_12Feb04_033_F Ovules - day of anthesis Gossypium hirsutum cDNA, mRNA sequence.
DW232925.1:41-60
TTCCTTAGCATGTCATTGGCATAGCAGTGT41TTTGGAGCAGATGTGTGAGCTTCAATTTGTGTATTTGGTTTGGTGTTTTA
GH_TS_02-01-07R_A11_InvR_09Feb04_095_F Stem - 3-5 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW239577.1:541-560
TTCCTTAGCATGTCATTGGCATAGCAGTGT541TTTGGAGCAGATGTGTGAGCTTCAATTTGTGTATTTGGTTTGGTGTTTTA
GH_TMIRS_137_C07_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW509773.1:208-227
CTTCCTTAGCATGTCTTGGCATAGCTGTGT208TTTGGAGCAGATGTGTGAGCATCAATTTATGTACTTGGTTTGGTGTTTTA
GH_TMIRS_142_A12_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW510286.1:847-866
TTCCTTAGCATGTCATTGGCATAGCTGTGT847TTTGGAGCAGATGTGTGAGCATCAATTTATGTACTTGGTTTNGGTGTTTT
UFL_198_27 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES816674.1:184-203
TTCCTTAGCATGTCATTGGCATAGCTGTGT184TTTGGAGCAGATGTGTGAGCATCAATTTATGTACTTGGTTTGGTGTTTTA
UFL_179_85 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES818298.1:334-353
TTCCTTAGCATGTCATTGGCATAGCAGTGT334TTTGGAGCAGATGTGTGAGCTTCAATTTGTGTATTTGGTTTGGTGTTTTA
UFL_430_19 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES825509.1:501-520
TTCCTTAGCATGTCATTGGCATAGCTGTGT501TTTGGAGCAGATGTGTGAGCATCAATTTATGTACTTGGTTTGGTGTTTTA
UFL_203_90 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES828706.1:383-402
TTCCTTAGCATGTCATTGGCATAGCAGTGT383TTTGGAGCAGATGTGTGAGCTTCAATTTGTGTATTTGGTTTGGTGTTTTA
UFL_039_72 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES838112.1:626-645
TTCCTTAGCATGTCATTGGCATAGCTGTGT626TTTGGAGCAGATGTGTGAGCATCAATTTATGTACTTGGGTTTGGTGTTTT
sg033F11 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV494961.1:336-355
TTCCTTAGCATGTCATTGGCATAGCTGTGT336TTTGGAGCAGATGTGTGAGCATCAATTTATGTACTTGGTTTGGTGTTTTA
D03_F-28_027 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX172274.1:489-508
TTCCTTAGCATGTCATTGGCATAGCAGTGT489TTTGGAGCAGATGTGTGAGCTTCAATTTGTGTATTTGGTTTGGNGTTTTA
EST003435 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 14-A12 5', mRNA sequence.
GR710235.1:326-345
TTCCTTAGCATGTCATTGGCATAGCTGTGT326TTTGGAGCAGATGTGTGAGCATCAATTTATGTACTTGGTTTGGTGTTTTA
EST007015 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 33-J14 5', mRNA sequence.
GR713815.1:205-224
TTCCTTAGCATGTCATTGGCATAGCAGTGT205TTTGGAGCAGATGTGTGAGCTTCAATTTGTGTATTTGGTTTGGTTGTTTT
EST009061 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 41-E14 5', mRNA sequence.
GR715861.1:252-271
TTCCTTAGCATGTCATTGGCATAGCTGTGT252TTTGGAGCAGATGTGTGAGCATCAATTTATGTACTTGGTTTGGTGTTTTA
EST009071 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 41-F02 5', mRNA sequence.
GR715871.1:286-305
TTCCTTAGCATGTCATTGGCATAGCTGTGT286TTTGGAGCAGATGTGTGAGCATCAATTTATGTACTTGGTTTGGTGTTTTA
EST009345 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 42-E09 5', mRNA sequence.
GR716145.1:573-592
TTCCTTAGCATGTCATTGGCATAGCTGTGT573TTTGGAGCAGATGTGTGAGCATCAATTTATGTACTTGGTTTGGTGTTTTA
Gossypium turneri isolate D10-2 chromosome D10_09.
CP032579.1:24975571-24975590
TTCCTTAGCATGTCATTGGCATAGCAGTGT24975571TTTGGAGCAGATGTGTGAGCATCAATTTATGTACTTGGTTTGGTGTTTTA
Gossypium herbaceum isolate Zhongcao1 chromosome 9.
CP106695.1:25366708-25366727
TTCCTTAGCATGTCATTGGCATAGCAGTGT25366708TTTGGAGCAGATGTGTGAGCTTCAATTTGTGTATTTGGTTTGGTGTTTTA
Gossypium bickii isolate GPG1lz chromosome 10.
CP106713.1:126535456-126535475
TTCCTTGGCATGTCATTGGCATAGCAGTGT126535456TTTGGAGCAGATGTGTGAGCATCAATTTGTGTACTTGGTTTGGTGTTTTA
Aquirufa antheringensis strain 44A-TON chromosome, complete genome.
CP049835.1:1219502-1219521
ACTAGATAATGAATACCAAATCAGAGAGGC1219502TTTGGAGCAGATGTGTGAGCTGGTAAATGCAAAGGAAGATGTGTTTGAAA
GA__Ed0064D07r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0064D07r, mRNA sequence.
BQ412845.1:198-217
TAAAACACCAAACCAAATACACAAATTGAA198GCTCACACATCTGCTCCAAAACACTGCTATGCCAATGACATGCTAAGGAA
GA__Ed0106G08r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0106G08r, mRNA sequence.
BQ416083.1:201-220
TAAAACACCAAACCAAATACACAAATTGAA201GCTCACACATCTGCTCCAAAACACTGCTATGCCAATGACATGCTAAGGAA
GR__Ea46K04.f GR__Ea Gossypium raimondii cDNA clone GR__Ea46K04 5', mRNA sequence.
CO082155.1:163-182
TAAAACACCAAACCAAGTACATAAATTGAT163GCTCACACATCTGCTCCAAAACACAGCTATGCCAGCGTCTACCTGTAAAA
GR__Ea08F08.r GR__Ea Gossypium raimondii cDNA clone GR__Ea08F08 3', mRNA sequence.
CO089032.1:207-226
TAAAACACCAAACCAAGTACATAAATTGAT207GCTCACACATCTGCTCCAAAACACAGCTATGCCAGCGTCTACCTGTAAGA
GR__Eb0032A21.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0032A21 5', mRNA sequence.
CO103460.1:180-199
TAAAACACCAAACCAAGTACATAAATTGAT180GCTCACACATCTGCTCCAAAACACAGCTATGCCAGCGTCTACCTGTAAAA
GR__Eb0044G02.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0044G02 5', mRNA sequence.
CO110329.1:174-193
TAAAACACCAAACCAAGTACATAAATTGAT174GCTCACACATCTGCTCCAAAACACAGCTATGCCAGCGTCTACCTGTAAGA
GR__Eb0047G04.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0047G04 5', mRNA sequence.
CO111369.1:128-147
TAAAACACCAAACCAAGTACATAAATTGAT128GCTCACACATCTGCTCCAAAACACAGCTATGCCAGCGTCTACCTGTAAAA
GR__Eb01G14.r GR__Eb Gossypium raimondii cDNA clone GR__Eb01G14 3', mRNA sequence.
CO117547.1:142-161
TAAAACACCAAACCAAGTACATAAATTGAT142GCTCACACATCTGCTCCAAAACACAGCTATGCCAGCGTCTACCTGTAAAA
GR__Eb10H08.r GR__Eb Gossypium raimondii cDNA clone GR__Eb10H08 3', mRNA sequence.
CO126432.1:163-182
TAAAACACCAAACCAAGTACATAAATTGAT163GCTCACACATCTGCTCCAAAACACAGCTATGCCAGCGTCTACCTGTAAAA
GR__Eb44G02.f GR__Eb Gossypium raimondii cDNA clone GR__Eb44G02 5', mRNA sequence.
CO131863.1:174-193
TAAAACACCAAACCAAGTACATAAATTGAT174GCTCACACATCTGCTCCAAAACACAGCTATGCCAGCGTCTACCTGTAAGA
COT_AA_A02 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (AJ225806) potassium channel beta subunit [Egeria densa], mRNA sequence.
DT046366.1:164-183
ATAAAACACCAAACCAAGTACATAAATGAT164GCTCACACATCTGCTCCAAAACACAGCTATGCCAATGACATGCTAAGGAA
COT_AA_A11 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (AJ225806) potassium channel beta subunit [Egeria densa], mRNA sequence.
DT046375.1:164-183
ATAAAACACCAAACCAAGTACATAAATGAT164GCTCACACATCTGCTCCAAAACACAGCTATGCCAATGACATGCTAAGGAA
COT_AA_B12 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (NM_100349) putative K+ channel, beta subunit; protein id: At1g04690.1, mRNA sequence.
DT046385.1:165-184
ATAAAACACCAAACCAAGTACATAAATGAT165GCTCACACATCTGCTCCAAAACACAGCTATGCCAATGACATGCTAAGGAA
COT_AA_G12 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (AJ225806) potassium channel beta subunit [Egeria densa], mRNA sequence.
DT046438.1:163-182
ATAAAACACCAAACCAAGTACATAAATGAT163GCTCACACATCTGCTCCAAAACACAGCTATGCCAATGACATGCTAAGGAA
COT_AC_B04 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (NM_100349) putative K+ channel, beta subunit; protein id: At1g04690.1, mRNA sequence.
DT046535.1:166-185
TAAAACACCAAACCAAGTACATAAATTGAT166GCTCACACATCTGCTCCAAAACACAGCTATGCCAATGACATGCTAAGGAA
COT_AC_C04 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (NM_100349) putative K+ channel, beta subunit; protein id: At1g04690.1, mRNA sequence.
DT046543.1:167-186
TAAAACACCAAACCAAGTACATAAATTGAT167GCTCACACATCTGCTCCAAAACACAGCTATGCCAATGACATGCTAAGGAA
COT_AC_E03 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (NM_100349) putative K+ channel, beta subunit; protein id: At1g04690.1, mRNA sequence.
DT046555.1:167-186
TAAAACACCAAACCAAGTACATAAATTGAT167GCTCACACATCTGCTCCAAAACACAGCTATGCCAATGACATGCTAAGGAA
COT_AC_E05 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to ((NM_100349) putative K+ channel, beta subunit; protein id: At1g04690.1, mRNA sequence.
DT046556.1:166-185
TAAAACACCAAACCAAGTACATAAATTGAT166GCTCACACATCTGCTCCAAAACACAGCTATGCCAATGACATGCTAAGGAA
COT_AC_E09 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (NM_100349) putative K+ channel, beta subunit; protein id: At1g04690.1, mRNA sequence.
DT046559.1:167-186
TAAAACACCAAACCAAGTACATAAATTGAT167GCTCACACATCTGCTCCAAAACACAGCTATGCCAATGACATGCTAAGGAA
Gossypium raimondii isolate D5-4 chromosome D5_09.
CP032561.1:19095726-19095745
TAAAACACCAAACCAAGTACATAAATTGAT19095726GCTCACACATCTGCTCCAAAACACAGCTATGCCAGCGTCTACCTGTAAGA
Gossypium herbaceum isolate GPA1alz chromosome 9.
CP106708.1:47873123-47873142
TAAAACACCAAACCAAATACACAAATTGAA47873123GCTCACACATCTGCTCCAAAACACTGCTATGCCAATGACATGCTAAGGAA
Gossypium bickii isolate GPG1lz chromosome 9.
CP106720.1:55336725-55336744
TAAAACACCAAACCAAGTACACAAATTGAT55336725GCTCACACATCTGCTCCAAAACACTGCTATGCCAATGACATGCCAAGGAA
Gossypium rotundifolium isolate GPK201 chromosome 9.
CP106730.1:68153437-68153456
TAAAACACCAAACCAAGTACACAAATTGAT68153437GCTCACACATCTGCTCCAAAACACTGCTATGCCAATGACATGCCAAGGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTTGGAGCAGATGTGTGAGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTGGAGCAGATGTGTGAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.165 | 1.156 | search_plus_done; http://172.18.8.135:50400/match?q=TTTGGAGCAGATGTGTGAGC&k=0&no_gap=0&offset=0&limit=50
1.813 | 0.648 | search_minus_done; http://172.18.8.135:50400/match?q=GCTCACACATCTGCTCCAAA&k=0&no_gap=0&offset=0&limit=19
1.828 | 0.015 | cgi_end;

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