GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 17:06:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gossypium arboreum clone GM030M09-jkp, complete sequence.
AC243097.1:11965-11985
GAGCAAAGAGGGGCAGCTGTTGTAGGCCAA11965TTTTGACCCCATAAAACCCACACCAACTAAACCTAAATTTAACCCCAATAC
Gossypium herbaceum isolate Zhongcao1 chromosome 12.
CP106691.1:14455835-14455855
GAGCAAAGAGGGGCAGCTGTTGTAGGCCAA14455835TTTTGACCCCATAAAACCCACACCAACTAAACCCAAATTTAACCCCAATAC
Lucinisca nassula genome assembly, chromosome: 5.
OY757014.1:20667249-20667269
TCCATGCATCACGAAAACATGCCTATATAA20667249TTTTGACCCCATAAAACCCACTTTTATACAGTTAAACTGGGGTTTGCAGGG
Lucinisca nassula genome assembly, chromosome: 5.
OY757014.1:66235310-66235330
GGTGACATCACGAAAACACACCTGTATTAA66235310TTTTGACCCCATAAAACCCACCGCTTATACAGTAAAACTGAGGTTTACAGG
Gossypium arboreum cultivar Shixiya1 chromosome 12.
CP053561.1:73680208-73680228
GTATTGGGGTTAAATTTAGGTTTAGTTGGT73680208GTGGGTTTTATGGGGTCAAAATTGGCCTACAACAGCTGCCCCTCTTTGCTC
Gossypium herbaceum isolate GPA1alz chromosome 12.
CP106705.1:95417638-95417658
GTATTGGGGTTAAATTTGGGTTTAGTTGGT95417638GTGGGTTTTATGGGGTCAAAATTGGCCTACAACAGCTGCCCCTCTTTGCTC
Acleris sparsana genome assembly, chromosome: 22.
OV281307.1:9515727-9515747
AAGTACGCTTTTAACATTTACTTTTATTTA9515727GTGGGTTTTATGGGGTCAAAACGGTTCTTGAGGTCGGCTTTTATACGCGAC
Lucinisca nassula genome assembly, chromosome: 15.
OY757024.1:13201127-13201147
CCCTCTAAACCCCAGTTTTACTATATAAAA13201127GTGGGTTTTATGGGGTCAAAACTATATAGGCATGTTTTTCTGATGCTTAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTTTGACCCCATAAAACCCAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTTGACCCCATAAAACCCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.107 | 0.098 | search_plus_done; http://172.18.8.135:50400/match?q=TTTTGACCCCATAAAACCCAC&k=0&no_gap=0&offset=0&limit=50
0.141 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=GTGGGTTTTATGGGGTCAAAA&k=0&no_gap=0&offset=0&limit=46
0.143 | 0.003 | cgi_end;

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