GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 13:23:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Homo sapiens chromosome 8, clone RP11-327N12, complete sequence.
AC016883.14:88430-88447
AAGGCCGGGTGAAAAGAACCACTGCCTTAG88430AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
Homo sapiens BAC clone RP11-382A18 from 8, complete sequence.
AC018714.4:171544-171561
AAGGCCGGGTGAAAAGAACCACTGCCTTAG171544AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
Homo sapiens genomic DNA, chromosome 8q24, clone: KB1205G3, complete sequence.
AP005662.3:86771-86788
AAGGCCGGGTGAAAAGAACCACTGCCTTAG86771AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
Homo sapiens DNA, chromosome 8, nearly complete genome.
AP023468.1:124201283-124201300
AAGGCCGGGTGAAAAGAACCACTGCCTTAG124201283AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
Homo sapiens isolate CHM13 chromosome 8.
CP061028.1:128531593-128531610
AAGGCCGGGTGAAAAGAACCACTGCCTTAG128531593AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
Homo sapiens isolate CHM13 chromosome 8.
CP068270.2:128531322-128531339
AAGGCCGGGTGAAAAGAACCACTGCCTTAG128531322AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
Homo sapiens isolate NA24385 chromosome 8.
CP139513.1:129008703-129008720
AAGGCCGGGTGAAAAGAACCACTGCCTTAG129008703AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
Homo sapiens isolate NA24385 chromosome 8.
CP139536.1:129065025-129065042
AAGGCCGGGTGAAAAGAACCACTGCCTTAG129065025AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
Human DNA sequence from clone XX-NCIH2171_5AM21.
CR942276.1:73271-73288
AAGGCCGGGTGAAAAGAACCACTGCCTTAG73271AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
Onychomys leucogaster genome assembly, chromosome: 15.
OX460385.1:71468663-71468680
AGCAACACCAAAGCAGTGATGTAGGTGAAA71468663AACCCTGCAGATGCAACTGTCCTCCTTGGCTTCAGCTGTCATCTTCAC
Onychomys leucogaster genome assembly, chromosome: 15.
OX460432.1:71762473-71762490
AGCAACACCAAAGCAGTGATGTAGGTGAAA71762473AACCCTGCAGATGCAACTATCCTCCTTAGCTTCAGCTGTCATCTTCAC
Onychomys arenicola genome assembly, chromosome: 15.
OX460456.1:73623399-73623416
AGCAACACCAAAGCAGGGATGTAGGTGAAA73623399AACCCTGCAGATGCAACTGTCCTCCTTAGCTTCAGCTGTCATCTTCAC
Heterocephalus glaber genome assembly, chromosome: 3.
OZ001068.1:9568702-9568719
GCCTGAGCCTAAGGAGAGGGTCCACCAGCC9568702AACCCTGCAGATGCAACTCTGCTTCCTTCTCTCTTCCCCACCCAACCA
Heterocephalus glaber genome assembly, chromosome: 3.
OZ001111.1:8768703-8768720
GCCTGAGCCTAAGGAGAGGGTCCACCAGCC8768703AACCCTGCAGATGCAACTCTGCTTCCTTCTCTCTTCCCCACCCAACCA
Sardina pilchardus genome assembly, chromosome: 22.
OY974107.1:27949590-27949607
AAGTGAATTCATTGTCTCCGAGAGGTTCTT27949590AACCCTGCAGATGCAACTTGTTATGCGTTGGTCTCCCTGGAGCCTGTG
Sequence 50 from Patent WO2006117596.
CS459569.1:24136-24153
AAGGCCGGGTGAAAAGAACCACTGCCTTAG24136AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
Sequence 51 from Patent WO2006117596.
CS459570.1:171544-171561
AAGGCCGGGTGAAAAGAACCACTGCCTTAG171544AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
JP 2007535968-A/50: NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES.
DL005644.1:24136-24153
AAGGCCGGGTGAAAAGAACCACTGCCTTAG24136AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
JP 2007535968-A/51: NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES.
DL005645.1:171544-171561
AAGGCCGGGTGAAAAGAACCACTGCCTTAG171544AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
Sequence 2 from Patent EP3677693.
MP705844.1:128-145
AAGGCCGGGTGAAAAGAACCACTGCCTTAG128AACCCTGCAGATGCAACTTTGGGGACCTGTCCTATGATGCCTGGCCTG
Sequence 5 from Patent EP3677693.
MP705847.1:934-951
CAGCACCGGGGAAAAGAACCACTGCCTTAG934AACCCTGCAGATGCAACTTTGAATTACTGGACATCATAGGGACTGGGC
Sequence 2 from Patent WO2020141213.
MP729790.1:128-145
AAGGCCGGGTGAAAAGAACCACTGCCTTAG128AACCCTGCAGATGCAACTTTGGGGACCTGTCCTATGATGCCTGGCCTG
Sequence 5 from Patent WO2020141213.
MP729793.1:934-951
CAGCACCGGGGAAAAGAACCACTGCCTTAG934AACCCTGCAGATGCAACTTTGAATTACTGGACATCATAGGGACTGGGC
Eukaryotic synthetic construct chromosome 8.
CP034507.1:128406029-128406046
AAGGCCGGGTGAAAAGAACCACTGCCTTAG128406029AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
Eukaryotic synthetic construct chromosome 8.
CP034532.1:128406029-128406046
AAGGCCGGGTGAAAAGAACCACTGCCTTAG128406029AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
BOHFB25TR BOHF Brassica oleracea genomic clone BOHFB25, genomic survey sequence.
BH484729.1:95-112
CCAGAAGACCCACTCGTAGGAGGCATGACA95AACCCTGCAGATGCAACTGAGGTTGGTATTCTTCTTTGTTGCATATCT
BOHOV38TR BOHO Brassica oleracea genomic clone BOHOV38, genomic survey sequence.
BH495087.1:104-121
CCAGAAGACCCACTCGTAGGAGGCATGACA104AACCCTGCAGATGCAACTGAGGTTGGTATTCTTCTTTGTTGCATATCT
odg52f07.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH936786.1:223-240
CCAGAAGACCCACTCGTAGGAGGCATGACA223AACCCTGCAGATGCAACTGAGGTTGGTATTCTTCTTTGTTGCATATCT
BOT01-13N3TF BOT01 Brassica oleracea genomic clone BOT01-13N3, genomic survey sequence.
FI680993.1:714-731
CCAGAAGACCCACTCGTAGGAGGCATGACA714AACCCTGCAGATGCAACTGAGGTTGGTATTCTTCTTTGTTGCATATCT
Homo sapiens chromosome 3 clone RP11-382A16, WORKING DRAFT SEQUENCE, 19 unordered pieces.
AC073155.15:164611-164628
AAGGCCGGGTGAAAAGAACCACTGCCTTAG164611AACCCTGCAGATGCAACTTTGGTAAGAGCCCTTAGTCCTAGGTTTGGG
Genomic sequence for broccoli [Brassica oleracea L. (Italica group)] BAC clone B19N3, complete sequence.
AC149635.1:55527-55544
CCAGAAGACCCACTCGTAGGAGGCATGACA55527AACCCTGCAGATGCAACTGAGGTTGGTATTCTTCTTTGTTGCATATCT
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:10731686-10731703
CCAGAAGACCCACTCGTAGGAGGCATGACA10731686AACCCTGCAGATGCAACTGAGGTTGGTATTCTTCTTTGTTGCATATCT
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:53036434-53036451
AAACTTTACCATATCGTAGGAGGCATGACA53036434AACCCTGCAGATGCAACTGAGGTTGGTATTCTTCTTTGTTGCATATCT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:745266-745283
CCAGAAGACCCACTCGTAGGAGGCATGACA745266AACCCTGCAGATGCAACTGAGGTTGGTATTCTTCTTTGTTGCATATCT
Brassica napus genome assembly, chromosome: A02.
HG994356.1:10584923-10584940
CCAGAAGACCCACTCGTAGGAGGCATGACA10584923AACCCTGCAGATGCAACTGAGGTTGGTATTCTTCTTTGTTGCATATCT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:26317447-26317464
AAACTTTACCATATCGTAGGAGGCATGACA26317447AACCCTGCAGATGCAACTGAGGTTGGTATTCTTCTTTGTTGCATATCT
Brassica napus genome assembly, chromosome: C06.
HG994370.1:47036112-47036129
AAACTTTACCATATCGTAGGAGGCATGACA47036112AACCCTGCAGATGCAACTGAGGTTGGTATTCTTCTTTGTTGCATATCT
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:3383961-3383978
CCAGAAGACCCACTCGTAGGAGGCATGACA3383961AACCCTGCAGATGCAACTGAGGTTGGTATTCTTCTTTGTTGCATATCT
Cenchrus americanus genome assembly, chromosome: PMC23DB2.
OX387240.1:84961183-84961200
CTCGAGGGCTGGGTCGGTCGCGAACCCACG84961183AACCCTGCAGATGCAACTAAGACGGGGGCACCTAGCTGCCACCCCGCA
Cenchrus americanus genome assembly, chromosome: PMC23DB3.
OX387241.1:41122633-41122650
CTCGAGGGTCGGCTCGACCGTGAACTCACG41122633AACCCTGCAGATGCAACTAAGACGAGGGCACCTAGCTGCCACCCCGCA
Hordeum vulgare genome assembly, chromosome: 2H.
OX460237.1:525095554-525095571
ACGACTTCTCTGAGGATTCTTGCTTACAGT525095554AACCCTGCAGATGCAACTGATACTGGAATTTGTATGGAAGACAGCACG
Populus nigra genome assembly, chromosome: 10.
OX637681.1:6422163-6422180
TCTTTCTTGGTTGCACTCGTGCATAAAATT6422163AACCCTGCAGATGCAACTATACACCCGAGTAGTTTCTATACATAGTCT
Hibiscus tridactylites genome assembly, chromosome: 14.
OY288278.1:86882198-86882215
CTCAGTCTGCAACTCTTCCCTCCTCTCTTC86882198AACCCTGCAGATGCAACTATTTATTTATACATATACACTACTATACGT
Galeopsis tetrahit genome assembly, chromosome: 11.
OY776129.1:49274503-49274520
AAAGAAACCAAGTTACAAACAAAATGATTC49274503AACCCTGCAGATGCAACTTTGAAATCTTATAGTATTGCAAATAAAAGG
Cenchrus americanus genome assembly, chromosome: Pg2.
OZ001398.1:87429640-87429657
CTCGAGGGCTGGGTCGGTCGCGAACCCACG87429640AACCCTGCAGATGCAACTAAGACGGGGGCACCTAGCTGCCACCCCGCA
Cenchrus americanus genome assembly, chromosome: Pg2.
OZ001406.1:88460970-88460987
CTCGAGGGCTGGGTCGGTCGCGAACCCACG88460970AACCCTGCAGATGCAACTAAGAAGGGGGCACCTAGGTGCCACCCCGCA
Cenchrus americanus genome assembly, chromosome: Pg3.
OZ001407.1:42036822-42036839
CTCGAGGGTCGGCTCGACCGTGAACCCACG42036822AACCCTGCAGATGCAACTAAGACGAGGGCACCTAGCTGCCACCCCGCA
Flavobacterium psychrotrophum strain CJ74 chromosome, complete genome.
CP031557.1:2591196-2591213
AATACCACATACAAGGTAATGATAGGCACT2591196AACCCTGCAGATGCAACTACTTTTACAGAGTTACAGGCATGGACTGAT
Eilema depressum genome assembly, chromosome: 17.
OU612029.1:18496657-18496674
TAAGAAGACTCCAGGACGTCTCCAAAGTGT18496657AACCCTGCAGATGCAACTGGGTAATGTTCAGACGATGATAAAAAAGGT
Musotima nitidalis genome assembly, chromosome: 4.
OX421417.1:641332-641349
GTCACTCGGTTGCATAATCTATTTGCATGC641332AACCCTGCAGATGCAACTAATCTCGGTTGGGTCTTAAATGATGGCCAG
Endomychus coccineus genome assembly, chromosome: 2.
OY294068.1:192133732-192133749
TTTATATCCCACAAATAAATTGACTTATCT192133732AACCCTGCAGATGCAACTTGTTCACGATCCTTTGCATATGCTAAAGCT
Trididemnum nubilum genome assembly, chromosome: 1.
OZ014469.1:4753415-4753432
CACCCTGCTGCTCCGTTTCAGAGTTTTACG4753415AACCCTGCAGATGCAACTCACGAACCCACAGTTTCTCAGAACCAATGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/aaccctgcagatgcaact
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : aaccctgcagatgcaact | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.422 | 0.413 | search_plus_done; http://172.18.8.135:50400/match?q=AACCCTGCAGATGCAACT&k=0&no_gap=0&offset=0&limit=50
0.487 | 0.065 | search_minus_done; http://172.18.8.135:50400/match?q=AGTTGCATCTGCAGGGTT&k=0&no_gap=0&offset=0&limit=0
0.487 | 0.000 | cgi_end;

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