GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Cajanus cajan cultivar UPAS 120 contig05248.UPAS mRNA sequence.
EZ622965.1:321-340

AACTAACACAATAGGCCCATCTCCAGGTTC321AAGAATTGGCTGGGCATTAACATGCACTATGGCAGGCAACAAGTATGCAA

54-L026093.SEQ Pigeonpea genomic pBluescript library Cajanus cajan genomic 3', genomic survey sequence.
CZ445554.1:711-730

GACATTATTTAGCTTCCTTGTGAGCTCACC711AAGAATTGGCTGGGCATTAACATGCACTATGGCAGGCAACAAGTATGCAA

Coriaria nepalensis isolate Cnep1 chromosome 07.
CP114467.1:8961738-8961757

CACTAAGTAATCTAATATTATATCATTACC8961738AAGAATTGGCTGGGCATTAACATGGACAATTGCAGGCAATAAGTATGCGA

Coriaria nepalensis isolate Cnep1 chromosome 07.
CP114487.1:9010885-9010904

CACTAAGTAATCTAATATTATATCATTACC9010885AAGAATTGGCTGGGCATTAACATGGACAATTGCAGGCAATAAGTATGCGA

Quercus dentata isolate Qdleaves-2020 chromosome 4.
CP116447.1:30583537-30583556

ACGTTTTAGCCAAACATTACACCCTTTACA30583537AAGAATTGGCTGGGCATTAACATGGACAATGGCAGGCAACAAGTAGGCAA

Quercus dentata isolate Qdleaves-2020 chromosome 4.
CP116447.1:63478653-63478672

ACGTTTCAGCCAAACATTACACCCTTTACA63478653AAGAATTGGCTGGGCATTAACATGGACAATGGCAGGCAACAGGTAGGCAA

Quercus dentata isolate Qdleaves-2020 chromosome 7.
CP116450.1:20518255-20518274

CGCGTTTTAGCCAAACATTACACCCTTACA20518255AAGAATTGGCTGGGCATTAACATGGACAATGGCAAGCAATAGGTAGGCAA

Quercus dentata isolate Qdleaves-2020 chromosome 9.
CP116452.1:27845828-27845847

GTTTCAGCGCCAAACATTACACCCTTTACA27845828AAGAATTGGCTGGGCATTAACATGGACAATGGCAGGCAACAGGTAGGCAA

Quercus dentata isolate Qdleaves-2020 chromosome 9.
CP116452.1:53352694-53352713

ATGTTTCAGCCAAACATTACACCCTTTACA53352694AAGAATTGGCTGGGCATTAACATGGACAATGGCAGGCAACAGGTAGGCAA

Quercus robur genome assembly, chromosome: 4.
OW028768.1:18474265-18474284

ACGTTTCAGCCAAACATTACACCCTTTACA18474265AAGAATTGGCTGGGCATTAACATGGACAATGGCAGGCAACAAGTAGGCAA

Myrica gale genome assembly, chromosome: 2.
OZ005599.1:25354723-25354742

ATCCAATTATCCAAATGTTACATCCTTACC25354723AAGAATTGGCTGGGCATTAACATGGACAATGGCAGGTAACAGGTAGGCAA

Myrica gale genome assembly, chromosome: 18.
OZ005615.1:14299797-14299816

ATCCAATTATCCAAATGTTACATCCTTACC14299797AAGAATTGGCTGGGCATTAACATGGACAATGGCAGGTAACAGGTAGGCAA

Pelobates cultripes genome assembly, chromosome: 07.
OW240918.1:23856411-23856430

ACTACGTTATTCAAACAGGGAGAGTGATTT23856411TTAATGCCCAGCCAATTCTTTCCATTTCAACAACATTATCAAATGTCACA

Quercus mongolica subsp. crispula mRNA, clone: Qm_001_10O01, 5'end sequence, expressed in inner bark.
DB999148.2:497-516

TTGCCTACCTGTTGCCTGCCATTGTCCATG497TTAATGCCCAGCCAATTCTTTCTCCTGGAGATGGCCCAATTGTTTTGGTA

TSA: Cajanus cajan cultivar Asha contig14922.Asha mRNA sequence.
EZ662786.1:494-513

TTGCATACTTGTTGCCTGCCATAGTGCATG494TTAATGCCCAGCCAATTCTTGAACCTGGAGATGGGCCTATTGTGTTAGTT

TSA: Betula platyphylla Unigene2736_ya_RNA mRNA sequence.
JP671037.1:37-56

TTGCGAAGTGTAGCCTCAGCCTCCGGAAAA37TTAATGCCCAGCCAATTCTTAAGTCTCCCCCAACATCTTTTAACTCGCAT

TSA: Betula platyphylla Unigene20758_All.Beplwood mRNA sequence.
KA260679.1:1306-1325

TTGCGAAGTGTAGCCTCAGCCTCCGGAAAA1306TTAATGCCCAGCCAATTCTTAAGTCTCCCCCAACATCTTTTAACTCGCAT

Quercus dentata isolate Qdleaves-2020 chromosome 4.
CP116447.1:40911731-40911750

CTTGCCTACCGTTGCCTGCCATTGTCCATG40911731TTAATGCCCAGCCAATTCTTTGTAAAGGGTGTAATGTTTGGGTGAAACGT

Quercus dentata isolate Qdleaves-2020 chromosome 4.
CP116447.1:106318097-106318116

TTGCCTACCTGTTGCCTGCCATTGTCCATG106318097TTAATGCCCAGCCAATTCTTTGTAAAGGGTGTAATGTTTGGCTGAAACGT

Quercus dentata isolate Qdleaves-2020 chromosome 5.
CP116448.1:15593276-15593295

TTGCCTACCTGTTGCCTGCCATTGTCCATG15593276TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGGTTGATTTAT

Quercus dentata isolate Qdleaves-2020 chromosome 6.
CP116449.1:60288492-60288511

TTGCCTACCTGTTGCCTGCCATTGTCCATG60288492TTAATGCCCAGCCAATTCTTTGTAAAGGGTGTAATGTTTGGCTGAAACGT

Quercus variabilis isolate HB chromosome 5b.
CP129437.1:11908721-11908740

TTGCCTACCTGTTGCCTGCCATTGTCCATG11908721TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGGTTGATTTAT

Quercus variabilis isolate HB chromosome 7b.
CP129439.1:22024112-22024131

TTGCCTACCTGTTGCCTGCCATTGTCCATG22024112TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTTGATTTATTCTT

Quercus variabilis isolate HB chromosome 5a.
CP129449.1:13485262-13485281

TTGCCTACCTGTTGCCTGCCATTGTCCATG13485262TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGGTTGATTTAT

Quercus variabilis isolate HB chromosome 7a.
CP129451.1:22446494-22446513

TTGCCTACCTCTTGCCTGTCATTGTCCATG22446494TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGGTTGATTTAT

Quercus robur genome assembly, chromosome: 2.
OW028766.1:94598443-94598462

TTGCCTACCTGTTGCCTGCCATTGTCCATG94598443TTAATGCCCAGCCAATTCTTTGTAAAGGGTGTAATGTTTGGCTGAAACGT

Quercus robur genome assembly, chromosome: 2.
OW028766.1:94694583-94694602

TTGCCTACCTGTTGCCTGCCATTGTCCATG94694583TTAATGCCCAGCCAATTCTTTGTAAAGGGTGTAATGTTTGGCTGAAACGT

Quercus robur genome assembly, chromosome: 4.
OW028768.1:9356202-9356221

TTGCCTACCTGTTGCCTGCCATTGTCCATG9356202TTAATGCCCAGCCAATTCTTTGTAAAGGGTGTAATGTTTGGCTGAAACGT

Quercus robur genome assembly, chromosome: 5.
OW028769.1:10941217-10941236

TTGCCTACCTGTTGCCTGCCATTGTCCATG10941217TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGGTTGATTTAT

Quercus robur genome assembly, chromosome: 5.
OW028769.1:11161994-11162013

TTGCCTACCTGTTGCCTGCCATTGTCCATG11161994TTAATGCCCAGCCAATTCTTTTTAAGGGTGTAATGTTTGGGTTGATTTAT

Quercus robur genome assembly, chromosome: 5.
OW028769.1:11541375-11541394

TTGCCTACCTGTTGCCTGCCATTGTCCATG11541375TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGGTTGATTTAT

Quercus robur genome assembly, chromosome: 7.
OW028770.1:32351832-32351851

TTGCCTACCTATTGCTTGCCATTGTCCATG32351832TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGCTAAAACGCG

Quercus robur genome assembly, chromosome: 11.
OW028775.1:7832109-7832128

TTGCCTACCTGTTGCCTGCCATTGTCCATG7832109TTAATGCCCAGCCAATTCTTTGTAAAGGGTGTAATGTTTGGCTGAAACGT

Quercus cerris genome assembly, chromosome: 3.
OY770008.1:10878984-10879003

TTGCCTACCTGTTGCCTGCCATTGTCCATG10878984TTAATGCCCAGCCAATTCTTTGTAAGGGTGTAATGTTTGGGTTGATTTAT

Quercus cerris genome assembly, chromosome: 3.
OY770008.1:10936706-10936725

TTGCCTACCTGTTGCCTGCCATTGTCCATG10936706TTAATGCCCAGCCAATTCTTTGTAAGGGTGTATTGTTTGGGTTGATTTAT

Quercus cerris genome assembly, chromosome: 3.
OY770008.1:11000778-11000797

TTGCCTACCTGTTGCCTGCCATTGTCCATG11000778TTAATGCCCAGCCAATTCTTTGTAAGGATGTAATGTTTGGTTGATTTATT

Quercus cerris genome assembly, chromosome: 11.
OY770016.1:21868307-21868326

TTGCCTACCTGTTGCCTGCCATTGTCCATG21868307TTAATGCCCAGCCAATTCTTTGTAGGGGTGTAATGTTTGGGTTGATTTAT

Myrica gale genome assembly, chromosome: 4.
OZ005601.1:5255695-5255714

TTGCCTACCTGTTACCTGCCATTGTCCATG5255695TTAATGCCCAGCCAATTCTTGGTAAGGATGTAACATTTGGATAATTGGAT

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Debug Info:

0.009 | 0.009 | search_start;
0.142 | 0.134 | search_plus_done; http://172.18.8.135:50400/match?q=AAGAATTGGCTGGGCATTAA&k=0&no_gap=0&offset=0&limit=50
0.390 | 0.248 | search_minus_done; http://172.18.8.135:50400/match?q=TTAATGCCCAGCCAATTCTT&k=0&no_gap=0&offset=0&limit=38
0.408 | 0.018 | cgi_end;

Summary:

Results:

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