GGGenome | Results

2025-04-17 15:00:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Mdfwf2085H20_e20613.g1 Apple_EST_Mdfwf Malus domestica cDNA 5' similar to ref|NP_195822.1| expressed protein [Arabidopsis thaliana] pir|T48223 hypothetical protein T7H20.70 - Arabidopsis thaliana emb|
GO547944.1:76-96

AAACAAACTAAATTTACATCCAAATCTTCA76ACCACATTAGAGCAGTTGAGGATGATTAAGTCACTAAACCAAACATCCTTT

Mdfrs3136J10_e7581.b1 Apple_EST_Mdfrs Malus domestica cDNA 3' similar to ref|NP_195822.1| expressed protein [Arabidopsis thaliana] pir|T48223 hypothetical protein T7H20.70 - Arabidopsis thaliana emb|C
GO567555.1:95-115

AAACAAACTAAATTTACATCCAAATCTTCA95ACCACATTAGAGCAGTTGAGGATGATTAAGTCACTAAACCAAACATCCTTT

Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:9678211-9678231

AAACAAACTAAATTTACATCCAAATCTTCA9678211ACCACATTAGAGCAGTTGAGGATGATTAAGTCACTAAACCAAACATCCTTT

Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:9479585-9479605

AAACAAACTAAATTTACATCCAAATCTTCA9479585ACCACATTAGAGCAGTTGAGGATGATTAAGTCACTAAACCAAACATCCTTT

Malus x robusta genome assembly, chromosome: 13.
OY720337.1:9550650-9550670

AAACAAACTAAATTTACATCCAAATCTTCA9550650ACCACATTAGAGCAGTTGAGGATGATTAAGTCACTAAACCAAACATCCTTT

Crataegus laevigata genome assembly, chromosome: 15.
OY756952.1:9762985-9763005

AAACAAACTAAATTAACATCCAAATCTTCA9762985ACCACATTAGAGCAGTTGAGGATGATTAAGTCACTAAACCAAACATCCTTT

Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:22610225-22610245

AAAGGATGTTTGGTTTAGTGACTTAATCAT22610225CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT

Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:23038451-23038471

AAAGGATGTTTGGTTTAGTGACTTAATCAT23038451CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT

Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:22729579-22729599

AAAGGATGTTTGGTTTAGTGACTTAATCAT22729579CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT

Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143386.1:21284106-21284126

AAAGGATGTTTGGTTTAGTGACTTAATCAT21284106CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT

Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:22395348-22395368

AAAGGATGTTTGGTTTAGTGACTTAATCAT22395348CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT

Malus domestica genome assembly, chromosome: 12.
OU696688.1:22369773-22369793

AAAGGATGTTTGGTTTAGTGACTTAATCAT22369773CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT

Malus domestica genome assembly, chromosome: 12.
OU744553.1:22524770-22524790

AAAGGATGTTTGGTTTAGTGACTTAATCAT22524770CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT

Malus domestica genome assembly, chromosome: 12.
OU744964.1:22003540-22003560

AAAGGATGTTTGGTTTAGTGACTTAATCAT22003540CCTCAACTGCTCTAATGTGGTTGAAGATTTGGATGTAAATTTAGTTTGTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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BED format: Link | Download
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Debug Info:

0.009 | 0.009 | search_start;
0.248 | 0.240 | search_plus_done; http://172.18.8.135:50400/match?q=ACCACATTAGAGCAGTTGAGG&k=0&no_gap=0&offset=0&limit=50
0.281 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=CCTCAACTGCTCTAATGTGGT&k=0&no_gap=0&offset=0&limit=44
0.286 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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