GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 22:09:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOT01-68M7TF BOT01 Brassica oleracea genomic clone BOT01-68M7, genomic survey sequence.
FI720191.1:506-525
TAAAATAAAACTACCTGCTCCACTTCCTCC506ACGTTGAGGAAACTGGTGACAGTTACCACTGAATAGAAACTGAGTAGGAC
Eustoma grandiflorum DNA, chromosome 4, draft genome sequence.
AP025043.1:11236756-11236775
ATGCTCGTGTGCACGTGATGACAGATATCG11236756ACGTTGAGGAAACTGGTGACGTCGTGACAGGTATTTTAATTACGCATAGT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41111078-41111097
TAAAATAAAATTACCTGCTCCACTTCCTCC41111078ACGTTGAGGAAACTGGTGACAGTTACCACTGAATAGAAACTGAGTAGGAC
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50360008-50360027
TAAAATAAAATTACCTGCTCCACTTCCTCC50360008ACGTTGAGGAAACTGGTGACAGTTACCACTGAATAGAAACTGAGTAGGAC
Carcina quercana genome assembly, chromosome: 6.
OU342432.1:5861130-5861149
ATTTAGTATGGAAGCATTCGGACAGGGATA5861130ACGTTGAGGAAACTGGTGACATAATTCGCTGTCACATCATACAACGTCTT
BOIDG28TR BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIDG28, genomic survey sequence.
CC950776.1:309-328
GTCCTACTCAGTTTCTATTCAGTGGTAACT309GTCACCAGTTTCCTCAACGTGGAGGAAGTGGAGCAGGTAGTTTTATTTTA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:554522-554541
GTCCTACTCAGTTTCTATTCAGTGGTAACT554522GTCACCAGTTTCCTCAACGTGGAGGAAGTGGAGCAGGTAATTTTATTTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/acgttgaggaaactggtgac
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : acgttgaggaaactggtgac | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.179 | 0.171 | search_plus_done; http://172.18.8.135:50400/match?q=ACGTTGAGGAAACTGGTGAC&k=0&no_gap=0&offset=0&limit=50
0.232 | 0.053 | search_minus_done; http://172.18.8.135:50400/match?q=GTCACCAGTTTCCTCAACGT&k=0&no_gap=0&offset=0&limit=45
0.233 | 0.001 | cgi_end;

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