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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 17:40:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Phalacrocorax carbo genome assembly, chromosome: 8.
OY997609.1:1941223-1941241
GACTCTCGGAGCATAGCCGGTTCCCCGTGG1941223AGAAGAGTCCTCGTTTTGCTTCACAAAAGACGTTAAGTCAAGCTCAGAC
0095448 Brassica napus Leaf library Brassica napus cDNA, mRNA sequence.
EV103756.1:181-199
CCTCTCACTCCTCCATAGATATAATCCTTA181AGAAGAGTCCTCGTTTTGCTATCCGACGTCTTAGCTTTAGCTCGATCCT
0176733 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV208026.1:169-187
CCTCTCACTCCTCCATAGATATAATCCTTG169AGAAGAGTCCTCGTTTTGCTATCCGACGTCTTAGCTTTAGCTCGATCCT
0185178 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV213357.1:228-246
CCTCTCACTCCTCCATAGATATAATCCTTG228AGAAGAGTCCTCGTTTTGCTATCCGACGTCTTAGCTTTAGCTCGATCCT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_8465.
FX685920.1:173-191
CCTCTCACTCCTCCATAGATATAATCCTTA173AGAAGAGTCCTCGTTTTGCTATCCGCCGACGTCTTAGCTTTAGCTCCAT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_2505.
FX691789.1:246-264
CCTCTCACTCCACCATATATATAGTCCTTA246AGAAGAGTCCTCGTTTTGCTATCAGCCACCTTCGCTTTCACTCTATCCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_35497.
FX725997.1:165-183
CCTCTCACTCCACCATATATATAGTCCTTA165AGAAGAGTCCTCGTTTTGCTATCAGCCACCTTCGCTTTCACTCTATCCT
Raphanus sativus cultivar WK10039 clone RSH026H2, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC255206.1:56856-56874
CCTCTCACTCCTCCATAGATATAATCCTTA56856AGAAGAGTCCTCGTTTTGCTATCCGCCGACGTCTTAGCTTTAGCTCCAT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:623436-623454
CCTCTCACTCCTCCATAGATATAGTCCTTA623436AGAAGAGTCCTCGTTTTGCTATCAGCCACCTTCGCTTTCACTCGATCCT
Brassica napus genome assembly, chromosome: A10.
HG994364.1:862950-862968
CCTCTCACTCCTCCATAGATATAATCCTTA862950AGAAGAGTCCTCGTTTTGCTATCCGACGTCTTAGCTTTAGCTCGATCCT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:906570-906588
CCTCTCACTCCTCCATAGATATAATCCTTG906570AGAAGAGTCCTCGTTTTGCTATCCGACGTCTTAGCTTTAGCTCGATCCT
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:869730-869748
CCTCTCACTCCTCCATAGATATAATCCTTG869730AGAAGAGTCCTCGTTTTGCTATCCGACGTCTTAGCTTTAGCTCGATCCT
Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:28745888-28745906
CCTCTCACTCCTCCATAGATATAATCCTTA28745888AGAAGAGTCCTCGTTTTGCTATCCGCCGACGTCTTAGCTTTAGCTCCAT
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:733439-733457
CCTCTCACTCCTCCATAGATATAATCCTTA733439AGAAGAGTCCTCGTTTTGCTATCCGCCGACGTCTTAGCTTTAGCTCCAT
Heteropelma amictum genome assembly, chromosome: 7.
OY390726.1:15474913-15474931
GGTGGCTGCAGTCCCCACGGGAGACCGCGG15474913AGAAGAGTCCTCGTTTTGCGAGCTCCGAGTCCCGAGCTCAAGGCCGTTT
Ischnus inquisitorius genome assembly, chromosome: 3.
OZ001245.1:5713959-5713977
GGCGGCTGCAGTCCGCACGGTAGACCTCGA5713959AGAAGAGTCCTCGTTTTGCGAGCTCCGAGTCCCGAACTCAAAGCTGTCT
Culex pipiens genome assembly, chromosome: 1.
OZ004311.1:113746368-113746386
GCCCAAAGAGACACGTTTCGGTACTTTTCG113746368AGAAGAGTCCTCGTTTTGCACCCAAACCCCACTTTCGATTGCCTTTGGG
Phalacrocorax aristotelis genome assembly, chromosome: 8.
OX451230.1:44819006-44819024
GTCTGAGCTTGACTTAACGTCTTTTGTGAA44819006GCAAAACGAGGACTCTTCTCCACGGGGAACCGGCTATGCTCCGAGAGTC
Zeus faber genome assembly, chromosome: 17.
OY482861.1:26387304-26387322
TTTAAACTGAAATCACTGAACCATTCAAGG26387304GCAAAACGAGGACTCTTCTGGTGAATTTTGGTTGTTTTGTTCAGCTTGT
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a003L07_T7.
AM388641.1:537-555
AGGATCGAGTGAAAGCGAAGGTGGCTGATA537GCAAAACGAGGACTCTTCTTAAGGACTATATCTATGGAGGAGTGAGAGG
Brassica oleracea var. viridis mRNA, clone: KALE-107D03, 3' end sequence.
DK556125.1:565-583
AGGATCGAGTGAAAGCGAAGGTGGCTGATA565GCAAAACGAGGACTCTTCTTAAGGACTATATCTATGGAGGAGTGAGAGG
Brassica oleracea var. viridis mRNA, clone: KALE-144N06, 3' end sequence.
DK570494.1:441-459
AGGATCGAGTGAAAGCGAAGGTGGCTGATA441GCAAAACGAGGACTCTTCTTAAGGACTATATCTATGGAGGAGTGAGAGG
6ETGS6H_UP_012_A04_15NOV2004_032 Brassica napus 6ETGS6h Brassica napus cDNA 5', mRNA sequence.
EE440248.1:261-279
AGGATCGAGCTAAAGCTAAGACGTCGGATA261GCAAAACGAGGACTCTTCTCAAGGATTATATCTATGGAGGAGTGAGAGG
BNZB_RP_017_D10_30APR2004_074 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE557553.1:36-54
TCCTATCAACGCAGAGTACGCGGGGGATTA36GCAAAACGAGGACTCTTCTCAAGGATTATATCTATGGAGGAGTGAGAGG
BNAEN3GH_UP_146_G07_29OCT2006_051 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
EV002291.1:149-167
AGGATCGAGCTAAAGCTAAGACGTCGGATA149GCAAAACGAGGACTCTTCTTAAGGATTATATCTATGGAGGAGTGAGAGG
BNSCS4CT_UP_172_B03_25MAY2007_029 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV071655.1:293-311
AGGATCGAGTGAAAGCGAAGGTGGCTGATA293GCAAAACGAGGACTCTTCTTAAGGACTATATCTATGGAGGAGTGAGAGG
0095717 Brassica napus Leaf library Brassica napus cDNA, mRNA sequence.
EV104025.1:552-570
AGGATCGAGCTAAAGCTAAGACGTCGGATA552GCAAAACGAGGACTCTTCTTNANGGATATATCTATGGAGGAGTGAGAGG
MMN1_1002 Brassica rapa mature median nectary, non-normalized (MMN1) Brassica rapa cDNA similar to kinase interacting family protein, mRNA sequence.
GR723561.1:241-259
AGGATAGAGTGAAAGCGAAGGTGGCTGATA241GCAAAACGAGGACTCTTCTTAAGGACTATATATATGGTGGAGTGAGAGG
KBrB092L16F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB092L16, genomic survey sequence.
DX080245.1:418-436
AGGATAGAGTGAAAGCGAAGGTGGCTGATA418GCAAAACGAGGACTCTTCTTAAGGACTATATATATGGTGGAGTGAGAGG
BOT01-10C19TF BOT01 Brassica oleracea genomic clone BOT01-10C19, genomic survey sequence.
FI682668.1:695-713
AGGATCGAGTGAAAGCGAAGGTGGCTGATA695GCAAAACGAGGACTCTTCTTAAGGACTATATCTATGGAGGAGTGAGAGG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB090K20, complete sequence.
AC232533.1:16990-17008
AGGATAGAGTGAAAGCGAAGGTGGCTGATA16990GCAAAACGAGGACTCTTCTTAAGGACTATATATATGGTGGAGTGAGAGG
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:68993978-68993996
AGGATAGAGTGAAAGCGAAGGTGGCTGATA68993978GCAAAACGAGGACTCTTCTTAAGGACTATATATATGGTGGAGTGAGAGG
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:25879233-25879251
AGGATCGAGCTAAAGCTAAGACGTCGGATA25879233GCAAAACGAGGACTCTTCTTAAGGATTATATCTATGGAGGAGTGAGAGG
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:58382133-58382151
AGGATCGAGCTAAAGCTAAGACGTCGGATA58382133GCAAAACGAGGACTCTTCTCAAGGATTATATCTATGGAGGAGTGAGAGG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:52933288-52933306
AGGATAGAGTGAAAGCGAAGGTGGCTGATA52933288GCAAAACGAGGACTCTTCTTAAGGACTATATATATGGTGGAGTGAGAGG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41053451-41053469
AGGATCGAGTGAAAGCGAAGGTGGCTGATA41053451GCAAAACGAGGACTCTTCTTAAGGACTATATCTATGGAGGAGTGAGAGG
Brassica rapa genome, scaffold: A09.
LR031568.1:57033760-57033778
AGGATAGAGTTAAAGCGAAGGTGGCTGATA57033760GCAAAACGAGGACTCTTCTTAAGGACTATATATATGGTGGAGTGAGAGG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50301030-50301048
AGGATCGAGTGAAAGCGAAGGTGGCTGATA50301030GCAAAACGAGGACTCTTCTTAAGGACTATATCTATGGAGGAGTGAGAGG
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:67557793-67557811
AGGATAGAGTTAAAGCGAAGGTGGCTGATA67557793GCAAAACGAGGACTCTTCTTAAGGACTATATATATGGTGGAGTGAGAGG
Archips xylosteana genome assembly, chromosome: 15.
OX387359.1:4507086-4507104
TATAGAGTCGGACTGAGGGCTATGAGGTAA4507086GCAAAACGAGGACTCTTCTAAATCGCATAGGCTCTTACAATAGGGATGC
Hyposoter dolosus genome assembly, chromosome: 7.
OY998135.1:5592601-5592619
AAACGGCTTTAAGTTCGGGACTGGGAGCGC5592601GCAAAACGAGGACTCTTCTTCGTGGTCTTCCATGAGGGCTGCAGCCACC

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