GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 17:13:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Homo sapiens 3 BAC RP13-489G4 (Roswell Park Cancer Institute Human BAC Library) complete sequence.
AC131154.2:100887-100906
GTCTCAGGAAATAGGGAGGTCTGAGGAGAG100887AGAGAGATGAGGGGATGGCTGGTCAGAGGAGAAGTCAGAACACACACCTG
Homo sapiens DNA, chromosome 3, nearly complete genome.
AP023463.1:76867325-76867344
GTCTCAGGAAATAGGGAGGTCTGAGGAGAG76867325AGAGAGATGAGGGGATGGCTGGTCAGAGGAGAAGTCAGAACACACACCTG
Homo sapiens isolate CHM13 chromosome 3.
CP068275.2:76855584-76855603
GTCTCAGGAAATAGGGAGGTCTGAGGAGAG76855584AGAGAGATGAGGGGATGGCTGGTCAGAGGAGAAGTCAGAACACACACCTG
Homo sapiens isolate NA24385 chromosome 3.
CP139518.1:76777054-76777073
GTCTCAGGAAATAGGGAGGTCTGAGGAGAG76777054AGAGAGATGAGGGGATGGCTGGTCAGAGGAGAAGTCAGAACACACACCTG
Homo sapiens isolate NA24385 chromosome 3.
CP139541.1:76858717-76858736
GTCTCAGGAAATAGGGAGGTCTGAGGAGAG76858717AGAGAGATGAGGGGATGGCTGGTCAGAGGAGAAGTCAGAACACACACCTG
Sarcophilus harrisii genome assembly, chromosome: 6.
LR735559.1:246989162-246989181
ACAGCATAGAAGTAATTATAAGTGTATCAT246989162AGAGAGATGAGGGGATGGCTGGTTATGAAGAACTCTGCCTCCAAAATGTC
Vespertilio murinus genome assembly, chromosome: 3.
OZ004706.1:117647418-117647437
CAGTGAATAAGGAAGCCTGAAGATAGGAGG117647418AGAGAGATGAGGGGATGGCTAGCTGGTAGAGCAGTAAGAACAACACATTC
Eukaryotic synthetic construct chromosome 3.
CP034502.1:76791099-76791118
GTCTCAGGAAATAGGGAGGTCTGAGGAGAG76791099AGAGAGATGAGGGGATGGCTGGTCAGAGGAGAAGTCAGAACACACACCTG
Eukaryotic synthetic construct chromosome 3.
CP034527.1:76791099-76791118
GTCTCAGGAAATAGGGAGGTCTGAGGAGAG76791099AGAGAGATGAGGGGATGGCTGGTCAGAGGAGAAGTCAGAACACACACCTG
NF031G03IN1F1023 Insect herbivory Medicago truncatula cDNA clone NF031G03IN 5', mRNA sequence.
BF640254.1:70-89
AGAGAGAGAGAGAGAGAGAGAGAGAGGCAN70AGAGAGATGAGGGGATGGCTGAACTTGAATGGTACAAGCAAATTACTACC
s13dNF0SD05MJ042_322004 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX534122.1:43-62
AGAGAGAGAGAGAGAGAGAGAGAGAGGCAG43AGAGAGATGAGGGGATGGCTGAACTTGAATGGTACAAGCAAATTACTACC
METCA73TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
GT138511.1:53-72
AGAGAGAGAGAGAGAGAGAGAGAGAGGCAG53AGAGAGATGAGGGGATGGCTGAACTTGAATGGTACAAGCAAATTACTACC
Homo sapiens chromosome 5 clone CTC-501B13, WORKING DRAFT SEQUENCE, 13 ordered pieces.
AC021084.3:107871-107890
GTCTCAGGAAATAGGGAGGTCTGAGGAGAG107871AGAGAGATGAGGGGATGGCTGGTCAGAGGAGAAGTCAGAACACACACCTG
Human chromosome 3 DNA sequence *** IN PROGRESS *** BAC R-528E14 of library RPCI-11 from chromosome 3 of Homo sapiens (Human).
AL162871.2:8262-8281
GTCTCAGGAAATAGGGAGGTCTGAGGAGAG8262AGAGAGATGAGGGGATGGCTGGTCAGAGGAGAAGTCAGAACACACACCTG
Medicago truncatula clone mth2-9i24, complete sequence.
AC126785.11:5800-5819
AGAGAGAGAGAGAGAGAGAGAGAGAGGCAG5800AGAGAGATGAGGGGATGGCTGAACTTGAATGGTACAAGCAAATTACTACC
Medicago truncatula clone JCVI-FLMt-22K7 unknown mRNA.
BT139396.1:53-72
AGAGAGAGAGAGAGAGAGAGAGAGAGGCAG53AGAGAGATGAGGGGATGGCTGAACTTGAATGGTACAAGCAAATTACTACC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:13282191-13282210
CTTTGAAGCTTATTACTAAGAAGATGAAGG13282191AGAGAGATGAGGGGATGGCTCTCATTTTTCTCTTTCAGTCTCCGATTGGG
Medicago truncatula chromosome 5 clone mth2-18j8, COMPLETE SEQUENCE.
CR962138.3:89460-89479
AGAGAGAGAGAGAGAGAGAGAGAGAGGCAG89460AGAGAGATGAGGGGATGGCTGAACTTGAATGGTACAAGCAAATTACTACC
Malus domestica genome assembly, chromosome: 1.
OU744542.1:13434467-13434486
CTTTGAAGCTTATTACTAAGAAGATGAAGG13434467AGAGAGATGAGGGGATGGCTCTCATTTTTCTCTTTCAGTCTCCGATTGGG
Capricornis sumatraensis isolate serow.1 chromosome 14.
CP135640.1:76965528-76965547
GTTATATATGTTCTGACTGGTCCACCAATC76965528AGCCATCCCCTCATCTCTCTCCCTCTCCTCAGGCCTTTCTATTCCCTAAG
T135801b shotgun sub-library of BAC clone 60O16 Medicago truncatula genomic clone 60-O-16-C-033, genomic survey sequence.
AQ580200.1:256-275
GGTAGTAATTTGCTTGTACCATTCAAGTTC256AGCCATCCCCTCATCTCTCTCTGCCTCTCTCTCTCTCTCTCTCTCTCTCT
Homo sapiens chromosome 3 clone RP11-3N12, *** SEQUENCING IN PROGRESS ***, 29 unordered pieces.
AC119036.1:298777-298796
CAGGTGTGTGTTCTGACTTCTCCTCTGACC298777AGCCATCCCCTCATCTCTCTCTCTCCTCAGACCTCCCTATTTCCTGAGAC
Phragmites australis genome assembly, chromosome: 11.
OY282622.1:5995978-5995997
GACGCCGAGGACCATCTCGTCGTGATAAGT5995978AGCCATCCCCTCATCTCTCTCTATTTATGCAAGGCTGAGCTGTCGTAGCC
Phragmites australis genome assembly, chromosome: 11.
OY282622.1:8794403-8794422
GATGCCGAGGACCACCTCGCCGTGGTGAGT8794403AGCCATCCCCTCATCTCTCTTTGATTATGCCCGACCGAGCCATCGTAGCC
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:20294835-20294854
CCCAATCGGAGACTGAAAGAGAAAAATGAG20294835AGCCATCCCCTCATCTCTCTCCTTCATCTTCTTAGTAATAAGCTTCAAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/agagagatgaggggatggct
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : agagagatgaggggatggct | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.230 | 0.221 | search_plus_done; http://172.18.8.135:50400/match?q=AGAGAGATGAGGGGATGGCT&k=0&no_gap=0&offset=0&limit=50
0.262 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=AGCCATCCCCTCATCTCTCT&k=0&no_gap=0&offset=0&limit=31
0.266 | 0.004 | cgi_end;

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