GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 23:48:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

537035 Solanum DArT library Solanum bulbocastanum/Solanum commersonii mixed library genomic, genomic survey sequence.
KG962904.1:4-24
TGC4AGCGGACAGTCTGCATATTTCAGACAAATAAAACATGAGGTAGAAGTAAAA
Solanum pinnatisectum cultivar CGN17745 chromosome 3.
CP047566.1:60746527-60746547
GACTAATACTCAGTGCATCCTTCATTCTGC60746527AGCGGACAGTCTGCATATTTCAGACAAATAAAACATGAGGTAGAAGTAAAC
Solanum verrucosum cultivar 11H23 chromosome 3.
CP133614.1:57444543-57444563
GACTAATACTCGGTGCATCCTTCATTCTGC57444543AGCGGACAGTCTGCATATTTCAGACAAATAAAACATGAGGTAGAAGTAAAC
GP295 Solanum tuberosum genomic sequence library GP Solanum tuberosum genomic clone GP295, genomic survey sequence.
CG783225.1:679-699
TTTTACTTCTACCTCATGTTTTATTTGTCT679GAAATATGCAGACTGTCCGCTGCAG
Hydrotaea diabolus genome assembly, chromosome: 4.
OY740719.1:64135042-64135062
AGGAAGACGCTTTTTATCTTGTTTTAAAAG64135042GAAATATGCAGACTGTCCGCTTTTTGAAAAAACGTAAAGGATTCATAATGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/agcggacagtctgcatatttc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : agcggacagtctgcatatttc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.151 | 0.142 | search_plus_done; http://172.18.8.135:50400/match?q=AGCGGACAGTCTGCATATTTC&k=0&no_gap=0&offset=0&limit=50
0.178 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=GAAATATGCAGACTGTCCGCT&k=0&no_gap=0&offset=0&limit=47
0.179 | 0.001 | cgi_end;

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