GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 10:07:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea trifida cultivar NCNSP0306 chromosome 2.
CP025645.1:6689857-6689880
CCCTCAAACTGAATTAAATCTGGAAAACCC6689857AGTGCTCCCCTTCAAGAATCATCAACACCCATTCTTGCTAAAATCAAGAAAATC
Ipomoea triloba cultivar NCNSP0323 chromosome 2.
CP025661.1:852852-852875
CCCTCAAACTGAATTAAATCTGGAAAACCC852852AGTGCTCCCCTTCAAGAATCATCAACACCCATTCTTGCTAAAATCAAGAAAATC
Ipomoea nil cDNA clone:jmsf22l09, 5' end.
CJ741832.1:171-194
GATTTTCTTGATTTTAGCAAGAATGGGTGT171TGATGATTCTTGAAGGGGAGCACTGGGTTTTCCAGATTTAATTCAGTTTGAGGG
Ipomoea nil mRNA, clone: jm43e14, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY923801.1:4-27
GGT4TGATGATTCTTGAAGGGGAGCACTGGGGTTTTCCAGATTTAATTCAGTTTGAGG
Ipomoea nil mRNA, clone: jm50b07, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY926288.1:4-27
GGT4TGATGATTCTTGAAGGGGAGCACTGGGTTTTCCAGATTTAATTCAGTTTGAGGG
Ipomoea nil mRNA, clone: JMFS121E09, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY945318.1:161-184
GATTTTCTTGATTTTAGCAAGAATGGGTGT161TGATGATTCTTGAAGGGGAGCACTGGGTTTTCCAGATTTAATTCAGTTTGAGGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/agtgctccccttcaagaatcatca
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : agtgctccccttcaagaatcatca | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.112 | 0.104 | search_plus_done; http://172.18.8.135:50400/match?q=AGTGCTCCCCTTCAAGAATCATCA&k=0&no_gap=0&offset=0&limit=50
0.437 | 0.325 | search_minus_done; http://172.18.8.135:50400/match?q=TGATGATTCTTGAAGGGGAGCACT&k=0&no_gap=0&offset=0&limit=48
0.440 | 0.003 | cgi_end;

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