GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-01-08 19:18:17, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus domestica cultivar Red Fuji chromosome 10.
CP147802.1:5438799-5438823
TCTTAAAGTCAGACTCCCATAAAAATTTGT5438799ATAAGGATACAAAAACCCTACACAGTTTCTCAACCCTCTCTCTCTCTCTCTCTCT
Malus domestica cultivar Red Fuji chromosome 10.
CP147811.1:4426167-4426191
TCTTAAAGTCAGACTCCCATAAAAATTTGT4426167ATAAGGATACAAAAACCCTACACAGTTTCTCAACCCTCTCTCTCTCTCTCTCTCT
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:38436137-38436161
AGAGAGAGAGAGAGAGAGAGGGTTGAGAAA38436137CTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGGAGTCTGACTTTAAGA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:39413753-39413777
AGAGAGAGAGAGAGAGAGAGGGTTGAGAAA39413753CTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGGAGTCTGACTTTAAGA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:36890058-36890082
AGAGAGAGAGAGAGAGAGAGGGTTGAGAAA36890058CTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGGAGTCTGACTTTAAGA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:37363697-37363721
AGAGAGAGAGAGAGAGAGAGGGTTGAGAAA37363697CTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGGAGTCTGACTTTAAGA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:39735924-39735948
AGAGAGAGAGAGAGAGAGAGGGTTGAGAAA39735924CTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGGAGTCTGACTTTAAGA
Malus domestica cultivar WA 38 chromosome 10B.
CP165693.1:39737496-39737520
AGAGAGAGAGAGAGAGAGAGGGTTGAGAAA39737496CTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGGAGTCTGACTTTAAGA
Malus domestica cultivar WA 38 chromosome 10A.
CP165710.1:37946568-37946592
AGAGAGAGAGAGAGAGAGAGGGTTGAGAAA37946568CTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGGAGTCTGACTTTAAGA
Malus domestica cultivar Golden Delicious chromosome 10.
CP168774.1:38586543-38586567
AGAGAGAGAGAGAGAGAGAGGGTTGAGAAA38586543CTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGGAGTCTGACTTTAAGA
Malus domestica cultivar Golden Delicious chromosome 10.
CP168791.1:38963023-38963047
AGAGAGAGAGAGAGAGAGAGGGTTGAGAAA38963023CTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGGAGTCTGACTTTAAGA
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:38442379-38442403
AGAGAGAGAGAGAGAGAGAGGGTTGAGAAA38442379CTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGGAGTCTGACTTTAAGA
Malus domestica genome assembly, chromosome: 10.
OU696686.1:38965748-38965772
AGAGAGAGAGAGAGAGAGAGGGTTGAGAAA38965748CTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGGAGTCTGACTTTAAGA
Malus domestica genome assembly, chromosome: 10.
OU744551.1:38672132-38672156
AGAGAGAGAGAGAGAGAGAGGGTTGAGAAA38672132CTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGGAGTCTGACTTTAAGA
Malus domestica genome assembly, chromosome: 10.
OU744962.1:39839518-39839542
AGAGAGAGAGAGAGAGAGAGGGTTGAGAAA39839518CTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGGAGTCTGACTTTAAGA
Malus domestica genome assembly, chromosome: 10.
OU745000.1:38465804-38465828
AGAGAGAGAGAGAGAGAGAGGGTTGAGAAA38465804CTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGGAGTCTGACTTTAAGA
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:37155186-37155210
AGAGAGAGAGAGAGAGAGAGGGTTGAGAAA37155186CTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGGAGTCTGACTTTAAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ataaggatacaaaaaccctacacag
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ataaggatacaaaaaccctacacag | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.344 | 0.335 | search_plus_done; http://172.18.8.135:50800/match?q=ATAAGGATACAAAAACCCTACACAG&k=0&no_gap=0&offset=0&limit=50
0.480 | 0.137 | search_minus_done; http://172.18.8.135:50800/match?q=CTGTGTAGGGTTTTTGTATCCTTAT&k=0&no_gap=0&offset=0&limit=48
0.491 | 0.010 | cgi_end;

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