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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 17:28:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea nil cDNA clone:jmsf11p21, 5' end.
CJ737707.1:111-134
GCTTTTTTGCGATCTCAATTCTCTCCTCAT111ATCTCTCTCCGACTCTGCGTTGTTCATTGCTATTCCNACTCTTTTTAGCGATTT
Ipomoea nil cDNA clone:jmsf30m17, 5' end.
CJ745098.1:109-132
GCTTTTTTGCGATCTCAATTCTCTCCTCAT109ATCTCTCTCCGACTCTGCGTTGTTCATTGCTATTCCNACTCTTTTTAGCGATTT
Ipomoea nil cDNA clone:jmsf6a06, 5' end.
CJ751972.1:93-116
GCTTTTTTGCGATCTCAATTCTCTCCTCAT93ATCTCTCTCCGACTCTGCGTTGTTCATTGCTATTCCNACTCTTTTTAGCGATTT
Ipomoea nil cDNA clone:jmsf42d09, 5' end.
CJ753813.1:93-116
GCTTTTTTGCGATCTCAATTCTCTCCTCAT93ATCTCTCTCCGACTCTGCGTTGTTCATTGCTATTCCNACTCTTTTTAGCGATTT
Ipomoea nil mRNA, clone: jm50e05, 5' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY926357.1:84-107
GCTTTTTTGCGATCTCAATTCTCTCCTCAT84ATCTCTCTCCGACTCTGCGTTGTTCATTGCTATTCCTACTCTTTTTAGCGATTT
Ipomoea trifida cultivar NCNSP0306 chromosome 2.
CP025645.1:8533405-8533428
AAATCGCTAAAAAGAGTAGGAATAGCAATG8533405AACAACGCAGAGTCGGAGAGAGATATGAGGAGAGAATTGAGATCGCAAAAAAGC
Ipomoea triloba cultivar NCNSP0323 chromosome 2.
CP025661.1:2861268-2861291
AAATCGCTAAAAAGAGTAGGAATAGCAATG2861268AACAACGCAGAGTCGGAGAGAGATATGAGGAGAGAATTGAGATCGCAAAAAAGC

Data Export:

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Debug Info:

GGGenome by @meso_cacase at DBCLS
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