GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 16:54:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 DNA, complete genome.
AP019740.1:816485-816504
GAATGAAGTAATTGAGACTACACCAGTTGT816485CAACACAGCATCAGAAGCGTTAACACAGCAGGAGCCTGCGCGTGAATCCA
Acinetobacter radioresistens strain DSSKY-A-001 chromosome, complete genome.
CP027365.1:796027-796046
GAATGAAGTAATTGAGACTACACCAGTTGT796027CAACACAGCATCAGAAGCGTTAACACAGCAGGAGCCTGCGCGTGAATCCA
Acinetobacter radioresistens strain LH6 chromosome, complete genome.
CP030031.1:791431-791450
GAATGAAGTAATTGAGACTACACCAGTTGT791431CAACACAGCATCAGAAGCGTTAACACAGCAGGAGCCTGCGCGTGAATCCA
Acinetobacter radioresistens strain DD78 chromosome, complete genome.
CP038022.1:802742-802761
GAATGAAGTAATTGAGACTACACCAGTTGT802742CAACACAGCATCAGAAGCGTTAACACAGCAGGAGCCTGCGCGTGAATCCA
Acinetobacter radioresistens strain FDAARGOS_731 chromosome.
CP059684.1:2433672-2433691
GAATGAAGTAATTGAGACTACACCAGTTGT2433672CAACACAGCATCAGAAGCGTTAACACAGCAGGAGCCTGCGCGTGAATCCA
Acinetobacter radioresistens strain Sample9_3 chromosome, complete genome.
CP124683.1:199901-199920
GAATGAAGTAATTGAGACTACACCAGTTGT199901CAACACAGCATCAGAAGCGTTAACACAGCAGGAGCCTGCGCGTGAATCCA
50-L026096.SEQ Pigeonpea genomic pBluescript library Cajanus cajan genomic 5', genomic survey sequence.
CZ445540.1:122-141
GCAAGTGTGGCAATGGTGTGTTGAAACAAA122ACGCTTCTGATGCTGTGTTGGGAGACGATGCTGGTGACAGTTCTGAATGT
Meconema thalassinum genome assembly, chromosome: 2.
OX336390.1:710356315-710356334
TGTAATACACACATTTTATCCGGTAAGTGA710356315ACGCTTCTGATGCTGTGTTGGCTTCTTGTATTCCGGTTATCGGTGTCCGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/caacacagcatcagaagcgT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : caacacagcatcagaagcgT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.091 | 0.082 | search_plus_done; http://172.18.8.135:50400/match?q=CAACACAGCATCAGAAGCGT&k=0&no_gap=0&offset=0&limit=50
0.126 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=ACGCTTCTGATGCTGTGTTG&k=0&no_gap=0&offset=0&limit=44
0.127 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).