GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 08:33:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Peromyscus eremicus genome assembly, chromosome: 4.
OX460397.1:4770521-4770539
CTGAGTGCTGGAATTTAAGGCATGCACCAC4770521CATCACCCAGCTGCACCATTACTGCCCAGCCCAATTGAGCTCTCTATGA
Peromyscus eremicus genome assembly, chromosome: 4.
OX460469.1:4281714-4281732
ATGAGTGCTGGAATTTAAGGCATGCACCAC4281714CATCACCCAGCTGCACCATTACTGCCCAGCCCAATTGAGCTCTCTATGA
Martes martes genome assembly, chromosome: 2.
OY734064.1:185789691-185789709
CTCCTCATAGCACATACTCTCCCCAATGTC185789691CATCACCCAGCTGCACCATCCCTCCCATCCCCCCTCCCCTCCAGCAATC
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 5.
OU383778.1:11124060-11124078
TACTGCTGTAACCTGTAATCTACTAAACCA11124060CATCACCCAGCTGCACCATTCCAGGCCAGCTGCAGGCTGAAGAAGCTGT
Rattus norvegicus clone CH230-520F8, WORKING DRAFT SEQUENCE, 9 unordered pieces.
AC128017.2:211531-211549
AGAGTCATTGGCTTGTCTGGTGTTGCCTGG211531CATCACCCAGCTGCACCATGTGGCTTTGCTGTGCTGAATACATAGATGG
Hordeum vulgare subsp. vulgare cultivar Morex clone BAC 0544E20, *** SEQUENCING IN PROGRESS ***, 48 unordered pieces.
AC262202.1:71380-71398
AGCATCATCGATGGAGTTACTGCATCGCGT71380CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare cultivar Morex clone BAC 0581G21, *** SEQUENCING IN PROGRESS ***, 27 unordered pieces.
AC263833.1:30185-30203
AGCATCATCGATGGAGTTACTGCATCGCGT30185CATCACCCAGCTGCACCATGCTGTTGGTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare cultivar Morex clone BAC 0377P22, *** SEQUENCING IN PROGRESS ***, 39 unordered pieces.
AC267438.1:2324-2342
AGCATGATCGATGGAGTTACTGCATCGCGT2324CATCACCCAGCTGCACCATGCTGTTGGTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR722621.1:567132545-567132563
AGCATCATCGATGGAGTTACTGCATCGCGT567132545CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR812975.1:567132545-567132563
AGCATCATCGATGGAGTTACTGCATCGCGT567132545CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 4H.
LR824635.1:601019150-601019168
AGCATCCTCGATGGAGTTACTGCATCGCGT601019150CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 3H.
LR828089.1:613638722-613638740
AGCATCATCGATGGAGTTACTGCATCGCGT613638722CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 4H.
LR828097.1:586072163-586072181
AGCATCCTCGATGGAGTTACTGCATCGCGT586072163CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828099.1:536332613-536332631
AGCATCATCGATGGAGTTACTGCATCGCGT536332613CATCACCCAGCTGCACCATGTTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828113.1:551260517-551260535
AGCATCATCGATGGAGTTACTGCATCGCGT551260517CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828151.2:553370271-553370289
AGCATCATCGATGGAGTTACTGCATCGCGT553370271CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828172.1:555828411-555828429
AGCATCATCGATGGAGTTACTGCATCGCGT555828411CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 4H.
LR828191.1:605165883-605165901
AGCATCCTCGATGGAGTTACTGCATCGCGT605165883CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR865400.1:540549009-540549027
AGCATCATCGATGGAGTTACTGCATCGCGT540549009CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR890101.1:555947108-555947126
AGCATCATCGATGGAGTTACTGCATCGCGT555947108CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
OU015685.1:518478042-518478060
AGCATCATCGATGGAGTTACTGCATCGCGT518478042CATCACCCAGCTGCACCATGCTGTTGGTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
OU015686.1:560086078-560086096
AGCATCATCGATGGAGTTACTGCATCGCGT560086078CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 1H.
OU015701.1:517538889-517538907
AGCATCATCGATGGAGTTACTGCATCGCGT517538889CATCACCCAGCTGCACCATGTTGTTACTCTTAAGGACATGGTACGCTGC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OU015705.1:516079236-516079254
AGCATGATCGATGGAGTTACTGCATCGCGT516079236CATCACCCAGCTGCACCATGCTGTTGGTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OU701468.1:483171941-483171959
AGCATCATCGATGGAGTTACTGCATCGCGT483171941CATCACCCAGCTGCACCATGTTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OU701468.1:491704776-491704794
AGCATCATCGATGGAGTTACTGCATCGCGT491704776CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX459914.1:553693464-553693482
AGCATCATCGATGGAGTTACTGCATCGCGT553693464CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 3H.
OX459972.1:618124037-618124055
AGCATCATCGATGGAGTTACTGCATCGCGT618124037CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 4H.
OX459980.1:583243260-583243278
AGCATCCTCGATGGAGTTACTGCATCGCGT583243260CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX459989.1:546308687-546308705
AGCATCATCGATGGAGTTACTGCATCGCGT546308687CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 1H.
OX459991.1:501636641-501636659
AGCATCATCGATGGAGTTACTGCATCGCGT501636641CATCACCCAGCTGCACCATGTTGTTACTCTTAAGGACATGGTACGCTGC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 4H.
OX460008.1:580364124-580364142
AGCATCCTCGATGGAGTTACTGCATCGCGT580364124CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460024.1:568827455-568827473
AGCATCATCGATGGAGTTACTGCATCGCGT568827455CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 3H.
OX460042.1:524229088-524229106
AGCATCATCGATGGAGTTACTCCATCGCGT524229088CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTCCGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460065.1:547808002-547808020
AGCATCATCGATGGAGTTACTGCATCGCGT547808002CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460073.1:573158972-573158990
AGCATCATCGATGGAGTTACTGCATCGCGT573158972CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 3H.
OX460084.1:597025173-597025191
AGCATCATCGATGGAGTTACTGCATCGCGT597025173CATCACCCAGCTGCACCATGTTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX460087.1:32929359-32929377
AGCATCATCGATGGAGTTACTGCATCGCGT32929359CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460100.1:546427608-546427626
AGCATCATCGATGGAGTTACTGCATCGCGT546427608CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460122.1:546431183-546431201
AGCATCATCGATGGAGTTACTGCATCGCGT546431183CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 7H.
OX460137.1:91063639-91063657
AGCATCATCGATGGAGTTACTGCATCGCGT91063639CATCACCCAGCTGCACCATGTTGTTGCTCTTAAGGACATGGGTCCGCTG
Hordeum vulgare genome assembly, chromosome: 4H.
OX460141.1:588776650-588776668
AGCATCCTCGATGGAGTTACTGCATCGCGT588776650CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460143.1:539386332-539386350
AGCATCATCGATGGAGTTACTGCATCGCGT539386332CATCACCCAGCTGCACCATGTTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460150.1:544292004-544292022
AGCATCATCGATGGAGTTACTGCATCGCGT544292004CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460157.1:548932184-548932202
AGCATCATCGATGGAGTTACTGCATCGCGT548932184CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460164.1:534796585-534796603
AGCATCATCGATGGAGTTACTGCATCGCGT534796585CATCACCCAGCTGCACCATGTTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 2H.
OX460188.1:617274068-617274086
AGCATCATCGATGGAGTTACTGCATCGCGT617274068CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 4H.
OX460197.1:586253081-586253099
AGCATCCTCGATGGAGTTACTGCATCGCGT586253081CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460199.1:543096498-543096516
AGCATCATCGATGGAGTTACTGCATCGCGT543096498CATCACCCAGCTGCACCATGTTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460234.1:557690115-557690133
AGCATCATCGATGGAGTTACTGCATCGCGT557690115CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460283.1:550802743-550802761
AGCATCATCGATGGAGTTACTGCATCGCGT550802743CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460290.1:550025966-550025984
AGCATCATCGATGGAGTTACTGCATCGCGT550025966CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 4H.
OX460302.1:586155373-586155391
AGCATCCTCGATGGAGTTACTGCATCGCGT586155373CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 6H.
OX460304.1:537939413-537939431
AGCATCATCGATGGAGTTACTGCATCGCGT537939413CATCACCCAGCTGCACCATGTTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX590745.1:579796663-579796681
AGCATCCTCGATGGAGTTACTGCATCGCGT579796663CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare f. agriocrithon genome assembly, chromosome: 6H.
OX590760.1:549670908-549670926
AGCATCATCGATGGAGTTACTGCATCGCGT549670908CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 3H.
OX590764.1:610355683-610355701
AGCATCATCGATGGAGTTACTGCATCGCGT610355683CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare genome assembly, chromosome: 4H.
OX638752.1:586038739-586038757
AGCATCCTCGATGGAGTTACTGCATCGCGT586038739CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 1H.
OX638770.1:503577158-503577176
AGCATCATCGATGGAGTTACTGCATCGCGT503577158CATCACCCAGCTGCACCATGTTGTTACTCTTAAGGACATGGTACGCTGC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638771.1:615301453-615301471
AGCATCATCGATGGAGTTACTGCATCGCGT615301453CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638778.1:614571914-614571932
AGCATCATCGATGGAGTTACTGCATCGCGT614571914CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638817.1:550460682-550460700
AGCATCATCGATGGAGTTACTGCATCGCGT550460682CATCACCCAGCTGCACCATGCTGTTGCTCTTAAGGACATGGGTACGCTG
Corynebacterium singulare strain IBS B52218, complete genome.
CP010827.1:342076-342094
GGCCGATGCGCTCGACGGTGATCTCAATGT342076CATCACCCAGCTGCACCATTCCATACATGGAGTAGGTCCACCCCACTAC
Corynebacterium minutissimum strain FDAARGOS_894 chromosome, complete genome.
CP065689.1:717571-717589
GGCCGACGCGCTCGACGGTGATCTCGATGT717571CATCACCCAGCTGCACCATGCCATACATGGAATAGGTCCAGCCCACCAC
Corynebacterium minutissimum strain FDAARGOS_1196 chromosome, complete genome.
CP069533.1:1574241-1574259
GGCCGACGCGCTCAACGGTGATCTCGATGT1574241CATCACCCAGCTGCACCATGCCATACATGGAATAGGTCCAGCCCACCAC
Corynebacterium minutissimum strain NCTC10285 genome assembly, chromosome: 1.
LR134339.1:515779-515797
GGCCGACGCGCTCGACGGTGATCTCGATGT515779CATCACCCAGCTGCACCATGCCATACATGGAATAGGTCCAGCCCACCAC
Cybosia mesomella genome assembly, chromosome: 11.
OX276399.1:6018376-6018394
GTGCGCCACATCGAACTTGGCACTTGGCAC6018376CATCACCCAGCTGCACCATGCAAACATAATCCAACTTTTTGGAATTTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/catcacccagctgcaccat
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : catcacccagctgcaccat | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.150 | 0.141 | search_plus_done; http://172.18.8.135:50400/match?q=CATCACCCAGCTGCACCAT&k=0&no_gap=0&offset=0&limit=50
0.213 | 0.063 | search_minus_done; http://172.18.8.135:50400/match?q=ATGGTGCAGCTGGGTGATG&k=0&no_gap=0&offset=0&limit=0
0.213 | 0.000 | cgi_end;

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