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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 20:59:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS26046C01 KS26 Capsicum annuum cDNA, mRNA sequence.
GD133864.1:259-282
TTAACAGCCATACCTCGAGAAATTTCATTG259CATGATACGAAGAACTTCTCCAACTCTTCATTTCCACTAACCTCAAAAAATTCG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 6.
CP124726.1:9666120-9666143
TTAACAGCCATACCTCGAGAAATTTCATTG9666120CATGATACGAAGAACTTCTCCAACTCTTCATTTCCACTAACCTCAAAAAATTCG
BJ02028H07 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO908273.1:275-298
CGAATTTTTTGAGGTTAGTGGAAATGAAGA275GTTGGAGAAGTTCTTCGTATCATGCAATGAAATTTCTCGAGGTATGGCTGTTAA
BJ02038A07 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO908947.1:229-252
CGAATTTTTTGAGGTTAGTGGAAATGAAGA229GTTGGAGAAGTTCTTCGTATCATGCAATGAAATTTCTCGAGGTATGGCTGTTAA
BJ02038G01 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO908996.1:221-244
CGAATTTTTTGAGGTTAGTGGAAATGAAGA221GTTGGAGAAGTTCTTCGTATCATGCAATGAAATTTCTCGAGGTATGGCTGTTAA
BJ02040A04 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO909106.1:328-351
CGAATTTTTTGAGGTTAGTGGAAATGAAGA328GTTGGAGAAGTTCTTCGTATCATGCAATGAAATTTCTCGAGGTATGGCTGTTAA
BJ02052D01 BJ02 Capsicum annuum cDNA 5', mRNA sequence.
CO909810.1:226-249
CGAATTTTTTGAGGTTAGTGGAAATGAAGA226GTTGGAGAAGTTCTTCGTATCATGCAATGAAATTTCTCGAGGTATGGCTGTTAA
BJ03005E05 BJ03 Capsicum annuum cDNA 5', mRNA sequence.
CO910390.1:280-303
CGAATTTTTTGAGGTTAGTGGAAATGAAGA280GTTGGAGAAGTTCTTCGTATCATGCAATGAAATTTCTCGAGGTATGGCTGTTAA
BJ03014C12 BJ03 Capsicum annuum cDNA 5', mRNA sequence.
CO911052.1:301-324
CGAATTTTTTGAGGTTAGTGGAAATGAAGA301GTTGGAGAAGTTCTTCGTATCATGCAATGAAATTTCTCGAGGTATGGCTGTTAA
BJ03014E06 BJ03 Capsicum annuum cDNA 5', mRNA sequence.
CO911064.1:300-323
CGAATTTTTTGAGGTTAGTGGAAATGAAGA300GTTGGAGAAGTTCTTCGTATCATGCAATGAAATTTCTCGAGGTATGGCTGTTAA
BJ03018E06 BJ03 Capsicum annuum cDNA 5', mRNA sequence.
CO911386.1:300-323
CGAATTTTTTGAGGTTAGTGGAAATGAAGA300GTTGGAGAAGTTCTTCGTATCATGCAATGAAATTTCTCGAGGTATGGCTGTTAA
BJ03020H11 BJ03 Capsicum annuum cDNA 5', mRNA sequence.
CO911564.1:274-297
CGAATTTTTTGAGGTTAGTGGAAATGAAGA274GTTGGAGAAGTTCTTCGTATCATGCAATGAAATTTCTCGAGGTATGGCTGTTAA
KS15032G06 KS15 Capsicum annuum cDNA, mRNA sequence.
GD066413.1:229-252
CGAATTTTTTGAGGTTAGTGGAAATGAAGA229GTTGGAGAAGTTCTTCGTATCATGCAATGAAATTTCTCGAGGTATGGCTGTTAA
KS17017H09 KS17 Capsicum annuum cDNA, mRNA sequence.
GD077124.1:281-304
CGAATTTTTTGAGGTTAGTGGAAATGAAGA281GTTGGAGAAGTTCTTCGTATCATGCAATGAAATTTCTCGAGGTATGGCTGTTAA
KS20002A07 KS20 Capsicum annuum cDNA, mRNA sequence.
GD093463.1:369-392
CGAATTTTTTGAGGTTAGTGGAAATGAAGA369GTTGGAGAAGTTCTTCGTATCATGCAATGAAATTTCTCGAGGTATGGCTGTTAA
TSA: Capsicum annuum MGMT_Contig20617, mRNA sequence.
JW070861.1:398-421
CGAATTTTTTGAGGTTAGTGGAAATGAAGA398GTTGGAGAAGTTCTTCGTATCATGCAATGAAATTTCTCGAGGTATGGCTGTTAA
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:243874182-243874205
CGAATTTTTTGAGGTTAGTGGAAATGAAGA243874182GTTGGAGAAGTTCTTCGTATCATGCAATGAAATTTCTCGAGGTATGGCTGTTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/catgatacgaagaacttctccaac
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : catgatacgaagaacttctccaac | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.200 | 0.192 | search_plus_done; http://172.18.8.135:50400/match?q=CATGATACGAAGAACTTCTCCAAC&k=0&no_gap=0&offset=0&limit=50
0.952 | 0.751 | search_minus_done; http://172.18.8.135:50400/match?q=GTTGGAGAAGTTCTTCGTATCATG&k=0&no_gap=0&offset=0&limit=48
0.961 | 0.010 | cgi_end;

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