GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-01-05 05:47:24, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus domestica cultivar Red Fuji chromosome 10.
CP147802.1:5438814-5438834
CCCATAAAAATTTGTATAAGGATACAAAAA5438814CCCTACACAGTTTCTCAACCCTCTCTCTCTCTCTCTCTCTCTCTCAAGTTT
Malus domestica cultivar Red Fuji chromosome 10.
CP147811.1:4426182-4426202
CCCATAAAAATTTGTATAAGGATACAAAAA4426182CCCTACACAGTTTCTCAACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
Rubus caesius genome assembly, chromosome: 3.
OZ174132.1:3802655-3802675
TGCAAAGAAAGTTATATAAAGAAACAAAAG3802655CCCTACACAGTTTCTCAACCCCTCCCCTTTTTTCTTTTCTTTGCCTAAATT
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:38436126-38436146
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA38436126GGGTTGAGAAACTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:39413742-39413762
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA39413742GGGTTGAGAAACTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGG
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:36890047-36890067
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA36890047GGGTTGAGAAACTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGG
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:37363686-37363706
GAGAAAGAGAGAGAGAGAGAGAGAGAGAGA37363686GGGTTGAGAAACTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:39735913-39735933
AAACTTGAGAGAGAGAGAGAGAGAGAGAGA39735913GGGTTGAGAAACTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:35769761-35769781
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA35769761GGGTTGAGAAACTGTGTAGGGTTTTTGTATCTTTATACAAATTTTTATGGG
Malus ioensis cultivar PI590015 chromosome 10.
CP154733.1:36188367-36188387
GAAAACTTGAGAGAGAGAGAGAGAGAGAGA36188367GGGTTGAGAAACTGTGTAGGGTTTTTGTATCTTTATACAAATTTTTGTGGG
Malus ioensis cultivar PI590015 chromosome 10.
CP154750.1:40050888-40050908
AAACTTGAGAGAGAGAGAGAGAGAGAGAGA40050888GGGTTGAGAAACTGTGTAGGGTTTTTGTATCTTTATACAAATTTTTGTGGG
Malus coronaria cultivar PI590014 chromosome 10.
CP154767.1:40791472-40791492
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA40791472GGGTTGAGAAACTGTGTAGGGTTTTTGTATCTTTATACAAATTTTTATGGG
Malus coronaria cultivar PI590014 chromosome 10.
CP154784.1:40773274-40773294
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA40773274GGGTTGAGAAACTGTGTAGGGTTTTTGTATCTTTATACAAATTTTTATGGG
Malus domestica cultivar WA 38 chromosome 10B.
CP165693.1:39737485-39737505
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA39737485GGGTTGAGAAACTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGG
Malus domestica cultivar WA 38 chromosome 10A.
CP165710.1:37946557-37946577
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA37946557GGGTTGAGAAACTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGG
Malus domestica cultivar Golden Delicious chromosome 10.
CP168774.1:38586532-38586552
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA38586532GGGTTGAGAAACTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGG
Malus domestica cultivar Golden Delicious chromosome 10.
CP168791.1:38963012-38963032
AAACTTGAGAGAGAGAGAGAGAGAGAGAGA38963012GGGTTGAGAAACTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGG
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:38442368-38442388
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA38442368GGGTTGAGAAACTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGG
Malus domestica genome assembly, chromosome: 10.
OU696686.1:38965737-38965757
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA38965737GGGTTGAGAAACTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGG
Malus domestica genome assembly, chromosome: 10.
OU744551.1:38672121-38672141
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA38672121GGGTTGAGAAACTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGG
Malus domestica genome assembly, chromosome: 10.
OU744962.1:39839507-39839527
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA39839507GGGTTGAGAAACTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGG
Malus domestica genome assembly, chromosome: 10.
OU745000.1:38465793-38465813
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA38465793GGGTTGAGAAACTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGG
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:37155175-37155195
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA37155175GGGTTGAGAAACTGTGTAGGGTTTTTGTATCCTTATACAAATTTTTATGGG
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:26912682-26912702
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA26912682GGGTTGAGAAACTGTGTAGGGTTTTTGTATCTTTATACAAATTTTTATGGG
Rubus caesius genome assembly, chromosome: 4.
OZ174133.1:44123489-44123509
ACAATTTAGGCAAAGAAAAGAAAAGGAGAG44123489GGGTTGAGAAACTGTGTAGGGCTTTTGTTTCTTTATATAACTTTCTTTGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ccctacacagtttctcaaccc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ccctacacagtttctcaaccc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.181 | 0.172 | search_plus_done; http://172.18.8.135:50800/match?q=CCCTACACAGTTTCTCAACCC&k=0&no_gap=0&offset=0&limit=50
0.308 | 0.128 | search_minus_done; http://172.18.8.135:50800/match?q=GGGTTGAGAAACTGTGTAGGG&k=0&no_gap=0&offset=0&limit=47
0.323 | 0.015 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).