GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 14:48:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS15058C08 KS15 Capsicum annuum cDNA, mRNA sequence.
GD068839.1:195-216
CCATTCGATATCCGATATTCATATTAGAGT195CCGATTAATCTTGATTTGAGCCAAATCGGGCCCATTCGGGGTAGCCTCCCTA
KS21062O04 KS21 Capsicum annuum cDNA, mRNA sequence.
GD104772.1:190-211
CCATTCGATATCCGATATTCATATTAGAGT190CCGATTAATCTTGATTTGAGCCAAATCGGGCCCATTCGGGGTAGCCTCCCTA
TSA: Capsicum annuum MGMT_Contig24962, mRNA sequence.
JW075206.1:641-662
TAGGGAGGCTACCCCGAATGGGCCCGATTT641GGCTCAAATCAAGATTAATCGGACATTAATATGAATATCGGACATCGAATGG
Capsicum annuum Takanotsume DNA, chromosome 8, sequence.
AP026703.1:172987570-172987591
TGGGGAGGCTACCCCGAATGGGCCCGATTT172987570GGCTCAAATCAAGATTAATCGGACTCTAATATGAATATCGGATATCGGATAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 8.
CP124724.1:184801710-184801731
TAGGGAGGCTACCCCGAATGGGCCCGATTT184801710GGCTCAAATCAAGATTAATCGGACATTAATATGAATATCGGACATCGAATGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ccgattaatcttgatttgagcc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ccgattaatcttgatttgagcc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.293 | 0.284 | search_plus_done; http://172.18.8.135:50400/match?q=CCGATTAATCTTGATTTGAGCC&k=0&no_gap=0&offset=0&limit=50
0.334 | 0.041 | search_minus_done; http://172.18.8.135:50400/match?q=GGCTCAAATCAAGATTAATCGG&k=0&no_gap=0&offset=0&limit=48
0.336 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).