GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 16:15:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Solanum pinnatisectum cultivar CGN17745 chromosome 3.
CP047566.1:60747132-60747154
CTTGAAGCCAAGAGAGTAAATTGGGACTAT60747132CTAATCGGAGCCTTAAACGATATATAGATATTTCATACGACAAATTGAAGTAC
Solanum tuberosum cultivar Solyntus chromosome 3.
CP055236.1:62228161-62228183
CTTGAAGCCAAGAGAGTAAATTGGGACTAT62228161CTAATCGGAGCCTTAAACGATATATAGACATTTCATACGACAAATTGAAGTAC
Solanum verrucosum cultivar 11H23 chromosome 3.
CP133614.1:57445152-57445174
CTTGAAGCCAAGAGAGTAAATTGGGACTAT57445152CTAATCGGAGCCTTAAACGATATATAGACATTTCATACGACAAATTGAAGTAC
GP295 Solanum tuberosum genomic sequence library GP Solanum tuberosum genomic clone GP295, genomic survey sequence.
CG783225.1:67-89
GTACTTCAATTTGTCGTATGAAATATCTTT67ATATCGTTTAAGGCTCCGATTAGATAGTCCCAATTTACTCTCTTGGCTTCAAG
535477 Solanum DArT library Solanum bulbocastanum/Solanum commersonii mixed library genomic, genomic survey sequence.
KG962717.1:65-87
GTACTTCAATTTGTCGTATGAAATGTCTAT65ATATCGTTTAAGGCTCCGATTAGATAGACCCAATTTACTCTCTTGGCTTCAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ctaatcggagccttaaacgatat
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ctaatcggagccttaaacgatat | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.100 | 0.090 | search_plus_done; http://172.18.8.135:50400/match?q=CTAATCGGAGCCTTAAACGATAT&k=0&no_gap=0&offset=0&limit=50
0.168 | 0.069 | search_minus_done; http://172.18.8.135:50400/match?q=ATATCGTTTAAGGCTCCGATTAG&k=0&no_gap=0&offset=0&limit=47
0.170 | 0.002 | cgi_end;

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