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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 05:05:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

WS0167.B21_F19 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_F19 3', mRNA sequence.
CV227500.1:132-159
AAAAAAAAACGAGCATGAATGCCGGTTGAG132CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS01210.B21_M01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01210_M01 3', mRNA sequence.
CV233421.1:191-218
AAAAAAAAACGAGCATGAATGCCGGTTGAG191CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS01213.B21_K18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01213_K18 3', mRNA sequence.
CV234112.1:188-215
TAAAAAAAACGAGCATGAATGCCGGTTGAG188CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS01218.B21_I04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01218_I04 3', mRNA sequence.
CV235283.1:191-218
AAAAAAAAACGAGCATGAATGCCGGTTGAG191CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS01218.B21_O09 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01218_O09 3', mRNA sequence.
CV235377.1:130-157
TAAAAAAAACGAGCATGAATGCCGGTTGAG130CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS01226.B21_I14 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_I14 3', mRNA sequence.
CV237173.1:130-157
TAAAAAAAACGAGCATGAATGCCGGTTGAG130CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS02515.B21_E05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02515_E05 3', mRNA sequence.
CV242511.1:112-139
AAAAAAAAACGAGCATGAATGCCGGTTGAG112CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS02515.B21_E08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02515_E08 3', mRNA sequence.
CV242513.1:131-158
TTAAAAAAACGAGCATGAATGCCGGTTGAG131CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS02515.B21_E22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02515_E22 3', mRNA sequence.
CV242526.1:131-158
TTAAAAAAACGAGCATGAATGCCGGTTGAG131CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS0252.B21_K08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0252_K08 3', mRNA sequence.
CV243712.1:132-159
TAAAAAAAACGAGCATGAATGCCGGTTGAG132CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS0259.B21_A10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0259_A10 3', mRNA sequence.
CV245654.1:129-156
AAAAAAAAACGAGCATGAATGCCGGTTGAG129CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS01125.B21_K20 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_K20 3', mRNA sequence.
CV249903.1:129-156
AAAAAAAAACGAGCATGAATGCCGGTTGAG129CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS02411.B21_J19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02411_J19 3', mRNA sequence.
CV254935.1:133-160
TAAAAAAAACGAGCATGAATGCCGGTTGAG133CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS02010.B21_J22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02010_J22 3', mRNA sequence.
CV259181.1:187-214
AAAAAAAAACGAGCATGAATGCCGGTTGAG187CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS02027.B21_E07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02027_E07 3', mRNA sequence.
CV265446.1:132-159
CATAAAAAACGAGCATGAATGCCGGTTGAG132CTTCAAGCTCATCGGCAATCAACCTTTATTTATGATAGTAACAACAAGGTTTTCCTAA
WS02030.B21_P04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02030_P04 3', mRNA sequence.
CV267144.1:112-139
CATAAAAAACGAGCATGAATGCCGGTTGAG112CTTCAAGCTCATCGGCAATCAACCTTTATTTATGATAGTAACAACAAGGTTTTCCTAA
WS02031.B21_D11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02031_D11 3', mRNA sequence.
CV267241.1:131-158
CATAAAAAACGAGCATGAATGCCGGTTGAG131CTTCAAGCTCATCGGCAATCAACCTTTATTTATGATAGTAACAACAAGGTTTTCCTAA
WS0205.B21_M16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS0205_M16 3', mRNA sequence.
CV268548.1:122-149
CATAAAAAACGAGCATGAATGCCGGTTGAG122CTTCAAGCTCATCGGCAATCAACCTTTATTTATGATAGTAACAACAAGGTTTTCCTAA
WS0151.B21_N07 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA clone WS0151_N07 3', mRNA sequence.
CV270375.1:133-160
CATAAAAAACGAGCATGAATGCCGGTTGAG133CTTCAAGCTCATCGGCAATCAACCTTTATTTATGATAGTAACAACAAGGTTTTCCTAA
WS0156.B21.1_N21 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA clone WS0156_N21 3', mRNA sequence.
CV272167.1:132-159
CATAAAAAACGAGCATGAATGCCGGTTGAG132CTTCAAGCTCATCGGCAATCAACCTTTATTTATGATAGTAACAACAAGGTTTTCCTAA
WS0157.B21_A01 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA clone WS0157_A01 3', mRNA sequence.
CV272211.1:168-195
CATAAAAAACGAGCATGAATGCCGGTTGAG168CTTCAAGCTCATCGGCAATCAACCTTTATTTATGATAGTAACAACAAGGTTTTCCTAA
Populus nigra mRNA, clone: PnFL2-004_F16, 3'end.
DB893753.1:381-408
CATAAAAAACGAGCATGAATGCCGGTTGAG381CTTCAAGCTCATCGGCAATCAACCTTTATTTATGATAGTAACAACAAGGTTTTCCTAA
Populus nigra mRNA, clone: PnFL2-007_E20, 3'end.
DB894274.1:227-254
CATAAAAAACGAGCATGAATGCCGGTTGAG227CTTCAAGCTCATCGGCAATCAACCTTTATTTATGATAGTAACAACAAGGTTTTCCTAA
Populus nigra mRNA, clone: PnFL2-069_B14, 3'end.
DB904993.1:61-88
CATAAAAAACGAGCATGAATGCCGGTTGAG61CTTCAAGCTCATCGGCAATCAACCTTTATTTATGATAGTAACAACAAGGTTTTCCTAA
WS01230.B21_C05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_C05 3', mRNA sequence.
DT476592.1:153-180
AAAAAAAAACGAGCATGAATGCCGGTTGAG153CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS02519.B21_A01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_A01 3', mRNA sequence.
DT482137.1:112-139
AAAAAAAAACGAGCATGAATGCCGGTTGAG112CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS02421.B21_B02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02421_B02 3', mRNA sequence.
DT513079.1:132-159
TAAAAAAAACGAGCATGAATGCCGGTTGAG132CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS02422.B21_O09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02422_O09 3', mRNA sequence.
DT513748.1:130-157
TAAAAAAAACGAGCATGAATGCCGGTTGAG130CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS02426.B21_J13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02426_J13 3', mRNA sequence.
DT515080.1:131-158
TAAAAAAAACGAGCATGAATGCCGGTTGAG131CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS02433.B21_F12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02433_F12 3', mRNA sequence.
DT517112.1:131-158
TAAAAAAAACGAGCATGAATGCCGGTTGAG131CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS02438.B21_P15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02438_P15 3', mRNA sequence.
DT518702.1:124-151
TAAAAAAAACGAGCATGAATGCCGGTTGAG124CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS02440.B21_N07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02440_N07 3', mRNA sequence.
DT519245.1:122-149
TAAAAAAAACGAGCATGAATGCCGGTTGAG122CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS02038.B21_P22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02038_P22 3', mRNA sequence.
DT523175.1:189-216
AAAAAAAAACGAGCATGAATGCCGGTTGAG189CTTCAAGCTCATCGGCAATCAACCTTTATTTATGACAGTAACAACAAGGTTTTGCTAA
WS02043.C21_A10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02043_A10 3', mRNA sequence.
DT524572.1:112-139
CATAAAAAACGAGCATGAATGCCGGTTGAG112CTTCAAGCTCATCGGCAATCAACCTTTATTTATGATAGTAACAACAAGGTTTTCCTAA
Populus nigra genome assembly, chromosome: 6.
OX637677.1:2582371-2582398
CATAAAAAACGAGCATGAATGCCGGTTGAG2582371CTTCAAGCTCATCGGCAATCAACCTTTATTTATGATAGTAACAACAAGGTTTTCCTAA
Populus euphratica EST, clone P0000100008G11F1.
AJ767660.1:424-451
TTTCTAGCAAAACCTTGTTACTGTCATAAA424TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAACCGGCATTCATGCTCGTTTTTCGTT
Populus euphratica EST, clone P0000800002E07F1.
AJ779421.1:280-307
TTTTTAGCAAAACCTGGTTACTGTCATAAA280TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAACCGGCATTCATGCTCGTTTTTCGTT
UL72PH06 Populus leaf cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.
BU810594.1:401-428
TTCTAGCAAAACCCTTGTAGCTGTCATAAA401TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAGCCGGCATACATGCTCG
M118B08 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence.
BU868620.1:734-761
TTAGCAAAACCTTGTTGTTACTGTCATAAA734TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAACCGGCATTCA
P057F08 Populus petioles cDNA library Populus tremula cDNA 5 prime, mRNA sequence.
BU891967.1:556-583
TTTTAGCAAAACCCTTGTTGCTGTCATAAA556TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAGCCGGCATTCATGCTCGTTTTTTATG
R29C08 two-month-old roots from clone 'Beaupre' Populus trichocarpa x Populus deltoides cDNA 5', mRNA sequence.
CA823643.1:181-208
TTAACAAAACCTTNNTGTTACTGTCATAAA181TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAACCGGCATTCATGCTCGTTTTTTGTG
R29H01 two-month-old roots from clone 'Beaupre' Populus trichocarpa x Populus deltoides cDNA 5', mRNA sequence.
CA823689.1:182-209
TTAACAAAACCTTGTTGTTACTGTCATAAA182TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAACCGGCATTCATGCTCGTTTTTTGTG
R30B07 two-month-old roots from clone 'Beaupre' Populus trichocarpa x Populus deltoides cDNA 5', mRNA sequence.
CA823710.1:464-491
TTAACAAAACCTTGTTGTTACTGTCATAAA464TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAACCGGCATTCATGCTCGTTTTTTGTG
R46G02 two-month-old roots from clone 'Beaupre' Populus trichocarpa x Populus deltoides cDNA 5', mRNA sequence.
CA824693.1:408-435
TTAGCAAAACCTTGTTGTTACTGTCATAAA408TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAACCGGCATTCATGCTCGTTTTTTTTT
MTU5CS.P17.G03 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA sequence.
CA932808.1:195-222
TTTTTAGCAAAACCTTGTTGCTGTCATAAA195TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAGCCGGCATTCATGCTCGTTTTTTATG
WS01226.BR.1_I14 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_I14 5', mRNA sequence.
DT472419.1:741-768
TTAGCAAAACCTTGTTGTTACTGTCATAAA741TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAACCGGCATTCATGCTCGTTTTTTTTA
WS01230.BR_C05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_C05 5', mRNA sequence.
DT473912.1:734-761
TTAGCAAAACCTTGTTGTTACTGTCATAAA734TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAACCGGCATTCATGCTCGTTTTTTTTT
WS02519.BR_A01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_A01 5', mRNA sequence.
DT477112.1:709-736
TTAGCAAAACCTTGTTGTTACTGTCATAAA709TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAACCGGCATTCATGCTCGTTTTTTTTT
WS01125.BR_K20 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_K20 5', mRNA sequence.
DT497165.1:92-119
TTAGCAAAACCTTGTTGTTACTGTCATAAA92TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAACCGGCATTCATGCTCGTTTTTTTTT
WS02421.BR_B02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02421_B02 5', mRNA sequence.
DT508470.1:722-749
TTAGCAAAACCTTGTTGTTACTGTCATAAA722TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAACCGGCATTCATGCTCGTTTTTTTTA
Populus trichocarpa clone WS01210_M01 unknown mRNA.
EF146619.1:740-767
TTAGCAAAACCTTGTTGTTACTGTCATAAA740TAAAGGTTGATTGCCGATGAGCTTGAAGCTCAACCGGCATTCATGCTCGTTTTTTTTT

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