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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 09:15:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig37494 mRNA sequence.
JW087738.1:1601-1624
GATTGCACATTGCTAATATGCACCTGGATT1601GACTCAACAGGGTACTCAGGAGATGAATCAACTATAATACGTTCTTCACTAATG
TSA: Capsicum annuum CMCs80_5530, mRNA sequence.
JW127937.1:699-722
GATTGCACATTGCTAATATGCACCTGGATT699GACTCAACAGGGTACTCAGGAGATGAATCAACTATAATACGTTCTTCACTAATG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:759462-759485
GATTGCACATTGCTAATATGCACCTGGATT759462GACTCAACAGGGTACTCAGGAGATGAATCAACTATAATACGTTCTTCACTAATG
KS14009D09 KS14 Capsicum annuum cDNA, mRNA sequence.
GD058270.1:74-97
CATTAGTGAAGAACGTATTATAGTTGATTC74ATCTCCTGAGTACCCTGTTGAGTCAATCCAGGTGCATATTAGCAATGTGCAATC
KS14013E08 KS14 Capsicum annuum cDNA, mRNA sequence.
GD058650.1:87-110
CATTAGTGAAGAACGTATTATAGTTGATTC87ATCTCCTGAGTACCCTGTTGAGTCAATCCAGGTGCATATTAGCAATGTGCAATC
KS14057F04 KS14 Capsicum annuum cDNA, mRNA sequence.
GD062733.1:87-110
CATTAGTGAAGAACGTATTATAGTTGATTC87ATCTCCTGAGTACCCTGTTGAGTCAATCCAGGTGCATATTAGCAATGTGCAATC
KS17053B10 KS17 Capsicum annuum cDNA, mRNA sequence.
GD080440.1:66-89
CATTAGTGAAGAACGTATTATAGTTGATTC66ATCTCCTGAGTACCCTGTTGAGTCAATCCAGGTGCATATTAGCAATGTGCAATC
KS19032B01 KS19 Capsicum annuum cDNA, mRNA sequence.
GD090232.1:18-41
GCACGAGGACTTTATTC18ATCTCCTGAGTACCCTGTTGAGTCAATCCAGGTGCATATTAGCAATGTGCAATC
KS20038E05 KS20 Capsicum annuum cDNA, mRNA sequence.
GD096838.1:158-181
CATTAGTGAAGAACGTATTATAGTTGATTC158ATCTCCTGAGTACCCTGTTGAGTCAATCCAGGTGCATATTAGCAATGTGCAATC
Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:291347954-291347977
CATTAGTGAAGAACGTATTATAGTTGATTC291347954ATCTCCTGAGTACCCTGTTGAGTCAATCCAGGTGCATATTAGCAATGTGCAATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gactcaacagggtactcaggagat
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gactcaacagggtactcaggagat | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.134 | 0.125 | search_plus_done; http://172.18.8.135:50400/match?q=GACTCAACAGGGTACTCAGGAGAT&k=0&no_gap=0&offset=0&limit=50
0.599 | 0.465 | search_minus_done; http://172.18.8.135:50400/match?q=ATCTCCTGAGTACCCTGTTGAGTC&k=0&no_gap=0&offset=0&limit=47
0.603 | 0.005 | cgi_end;

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