GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 15:55:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 7947 from Patent WO2008034648.
FB788674.1:871-892
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC871GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Sequence 29469 from Patent WO2008034648.
FB810196.1:871-892
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC871GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Sequence 65716 from Patent WO2008034648.
FB846443.1:871-892
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC871GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Sequence 90570 from Patent WO2008034648.
FB871297.1:871-892
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC871GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Sequence 92318 from Patent WO2008034648.
FB873045.1:871-892
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC871GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Sequence 138999 from Patent WO2008034648.
FB919726.1:871-892
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC871GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Sequence 7947 from Patent EP2090662.
HB658733.1:871-892
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC871GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Sequence 29469 from Patent EP2090662.
HB680255.1:871-892
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC871GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Sequence 65716 from Patent EP2090662.
HB716502.1:871-892
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC871GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Sequence 90570 from Patent EP2090662.
HB741356.1:871-892
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC871GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Sequence 92318 from Patent EP2090662.
HB743104.1:871-892
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC871GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Sequence 138999 from Patent EP2090662.
HB789785.1:871-892
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC871GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum vulgare EST clone S0000200059E06F1.
AJ434609.1:147-168
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC147GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
HK03G01u Hordeum vulgare cDNA clone 5'sequence; expressed sequence tag;.
AL450601.1:655-676
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC655GAGCAGTTCGCGAGGTCCATGA
EBro07_SQ002_M18_R root, 3 week, reduced light, cv Optic, EBro07 Hordeum vulgare subsp. vulgare cDNA clone EBro07_SQ002_M18 5', mRNA sequence.
BI778298.2:470-491
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC470GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
HD03B19r HD Hordeum vulgare cDNA clone HD03B19 5-PRIME, mRNA sequence.
BQ461834.1:251-272
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC251GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
HD01A02T HD Hordeum vulgare cDNA clone HD01A02 5-PRIME, mRNA sequence.
BQ462471.1:135-156
CACTTCTCCCTCAACCAGGGCGCTTTCTTC135GAGCAGTTCGCGAGGTCCATGACCAAGATGAACAACATGGACATTCTCTCCG
HA03D02r HA Hordeum vulgare subsp. vulgare cDNA clone HA03D02 5-PRIME, mRNA sequence.
BU976129.1:380-401
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC380GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
HC07A03w CH Hordeum vulgare cDNA clone HC07A03 5-PRIME, mRNA sequence.
CB866488.1:355-376
ACGCTTCTCCCTCAACCAGGGGCTTTCTTC355GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
HC05B04w CH Hordeum vulgare cDNA clone HC05B04 5-PRIME, mRNA sequence.
CB867094.1:24-45
CACGCGTCCGGGGCGCTTTCTTC24GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCCACCGG
HC09O19w CH Hordeum vulgare cDNA clone HC09O19 5-PRIME, mRNA sequence.
CB868962.1:382-403
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC382GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv2043H05, Normalized and subtracted barley full-length cDNA library from seedling shoot and root with JA treatment, 5' end sequence.
DK653062.1:639-660
CGCTTCTCCCTCCACCAGGGCGCTTTCTTC639GAGCAGTTCGCGAGGTCCATGAC
HO36L15S HO Hordeum vulgare cDNA clone HO36L15 5-PRIME, mRNA sequence.
DN177675.1:372-393
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC372GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
HO36H17S HO Hordeum vulgare cDNA clone HO36H17 5-PRIME, mRNA sequence.
DN177798.1:372-393
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC372GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
HO34N14S HO Hordeum vulgare cDNA clone HO34N14 5-PRIME, mRNA sequence.
DN178016.1:197-218
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC197GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
HO23D12S HO Hordeum vulgare cDNA clone HO23D12 5-PRIME, mRNA sequence.
DN181933.1:531-552
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC531GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
HO17I04S HO Hordeum vulgare cDNA clone HO17I04 5-PRIME, mRNA sequence.
DN183445.1:176-197
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC176GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
HVSMEf0019A05f2 Hordeum vulgare seedling root (etiolated unstressed) cDNA library HVSMEf (HVcDNA0007)2 Hordeum vulgare subsp. vulgare cDNA clone HV__Ea0020K05r, mRNA sequence.
GH216093.1:422-443
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC422GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum vulgare subsp. vulgare cultivar Morex clone BAC 0412I03, *** SEQUENCING IN PROGRESS ***, 75 unordered pieces.
AC261030.1:90208-90229
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC90208GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum vulgare mRNA for stress-related peroxidase.
AJ003141.1:963-984
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC963GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf40j09, mRNA sequence.
AK248518.1:950-971
CGCTTCTCCCTCCACCAGGGCGCTTTCTTC950GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001F12.
AK353596.1:950-971
CGCTTCTCCCTCCACCAGGGCGCTTTCTTC950GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
UNVERIFIED: Hordeum vulgare isolate SUP0020 stress-related peroxidase-like gene, partial sequence.
JN616267.1:111-132
CGTTTCTCCCTCAACCAGGGCGCTTTCTTC111GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
UNVERIFIED: Hordeum vulgare isolate SUP0021 stress-related peroxidase-like gene, partial sequence.
JN616268.1:68-89
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC68GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAAATGGACATTCTCACCGG
UNVERIFIED: Hordeum vulgare stress-related peroxidase-like gene, partial sequence.
JQ013295.1:111-132
CGTTTCTCCCTCAACCAGGGCGCTTTCTTC111GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAAATGGACATTCTCACCGG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
OX459999.1:656831159-656831180
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC656831159GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX460083.1:655670744-655670765
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC655670744GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum vulgare genome assembly, chromosome: 2H.
OX460216.1:658331871-658331892
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC658331871GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum vulgare genome assembly, chromosome: 2H.
OX460223.1:657621071-657621092
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC657621071GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum vulgare genome assembly, chromosome: 2H.
OX460293.1:661681323-661681344
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC661681323GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638764.1:656206596-656206617
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC656206596GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638771.1:648978587-648978608
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC648978587GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum bulbosum genome assembly, chromosome: 2H_1.
OY737410.1:583192307-583192328
CGCTTCTCCCTCAACCAGGGCGCCTTCTTC583192307GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum bulbosum genome assembly, chromosome: 2H_3.
OY737475.1:550780384-550780405
CGCTTCTCCCTCAACGAGGGCGCTTTCTTC550780384GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum bulbosum genome assembly, chromosome: 2H_1.
OY737519.1:554256075-554256096
CGCTTCTCCCTCAACGAGGGCGCCTTCTTC554256075GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum bulbosum genome assembly, chromosome: 2H_3.
OY737626.1:547603340-547603361
CGCTTCTCCCTCAACCAGGGCGCCTTCTTC547603340GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum bulbosum genome assembly, chromosome: 2H_4.
OY737633.1:559643405-559643426
CGCTTCTCCCTCAACCAGGGCGCCTTCTTC559643405GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
Hordeum bulbosum genome assembly, chromosome: 2H_1.
OY737867.1:361247920-361247941
CGCTTCTCCCTCAACCAGGGCGCCTTCTTC361247920GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
H.vulgare mRNA for peroxidase.
X62438.1:367-388
CGCTTCTCCCTCAACCAGGGCGCTTTCTTC367GAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCACCG
HD01A02w HD Hordeum vulgare cDNA clone HD01A02 3-PRIME, mRNA sequence.
BQ659349.1:266-287
CGGTGAGAATGTCCATGTTGCTCATCTTGG266TCATGGACCTCGCGAACTGCTCGAAGAAAGCGCCCTGGTTGAGGGAGAAGCG
Hordeum vulgare subsp. vulgare cultivar Morex clone HVVMRX83KhA0110E04, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces.
AC249159.1:78961-78982
CGGTGAGAATGTCCATGTTGCTCATCTTGG78961TCATGGACCTCGCGAACTGCTCGAAGAAAGCGCCCTGGTTGAGGGAGAAGCG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
HG994375.1:607765895-607765916
CGTCCTTTGTGTCCATGTTGCCCATCTTGA607765895TCATGGACCTCGCGAACTGCTCAAAGAAGGCGCGATCAGACCGTGATCTGAC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
LR828088.1:653953140-653953161
CGGTGAGAATGTCCATGTTGCTCATCTTGG653953140TCATGGACCTCGCGAACTGCTCGAAGAAAGCGCCCTGGTTGAGGGAGAAGCG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
LR890097.1:658096944-658096965
CGGTGAGAATGTCCATGTTGCTCATCTTGG658096944TCATGGACCTCGCGAACTGCTCGAAGAAAGCGCCCTGGTTGAGGGAGAAGCG
Hordeum vulgare genome assembly, chromosome: 2H.
OU701464.1:606018555-606018576
CGGTGAGAATGTCCATGTTGCTCATCTTGG606018555TCATGGACCTCGCGAACTGCTCGAAGAAAGCGCCCTGGTTGAGGGAGAAGCG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
OX459903.1:650189320-650189341
CGGTGAGAATGTCCATGTTGCTCATCTTGG650189320TCATGGACCTCGCGAACTGCTCGAAGAAAGCGCCCTGGTTGAGGGAGAAGCG
Hordeum vulgare genome assembly, chromosome: 2H.
OX460125.1:652588652-652588673
CGGTGAGAATGTCCATGTTGCTCATCTTGG652588652TCATGGACCTCGCGAACTGCTCGAAGAAAGCGCCCTGGTTGAGGGAGAAGCG
Hordeum vulgare genome assembly, chromosome: 2H.
OX638654.1:657385701-657385722
CGTCCTTTGTGTCCATGTTGCCCATCTTGA657385701TCATGGACCTCGCGAACTGCTCAAAGAAGGCGCGATCAGACCGTGATCTGAC
Hordeum bulbosum genome assembly, chromosome: 2H_4.
OY737482.1:522370460-522370481
CGGTGAGAATGTCCATGTTGCTCATCTTGG522370460TCATGGACCTCGCGAACTGCTCGAAGAAAGCGCCCTGGTTGAGGGAGAAGCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gagcagttcgcgaggtccatga
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gagcagttcgcgaggtccatga | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.678 | 0.669 | search_plus_done; http://172.18.8.135:50400/match?q=GAGCAGTTCGCGAGGTCCATGA&k=0&no_gap=0&offset=0&limit=50
0.751 | 0.073 | search_minus_done; http://172.18.8.135:50400/match?q=TCATGGACCTCGCGAACTGCTC&k=0&no_gap=0&offset=0&limit=1
0.757 | 0.007 | cgi_end;

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