GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 17:11:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea nil cDNA clone:jmsf20l17, 5' end.
CJ741115.1:179-202
TTTTTCANGGACATANNGAGATATTACTGC179GAGTTCTGTGGTATTTGCCGCTCTAANAAAGCACTCNTCTCCTCCCNTGTCCTT
Ipomoea nil cDNA clone:jmsf24c04, 5' end.
CJ742353.1:178-201
NTTTTCANGGACATANNGAGATATTACTGC178GAGTTCTGTGGTATTTGCCGCTCTAANAAAGCACTCNTCTCCTCCCNTGTCCTT
Ipomoea nil cDNA clone:jmsf4o24, 5' end.
CJ750503.1:181-204
TTTTTCNNGGACATANNGAGATATTACTGC181GAGTTCTGTGGTATTTGCCGCTCTAAGAAAGCACTCATCTCCTCCCNTGTCCTT
TSA: Ipomoea batatas Contig_15899.Ipbalsr mRNA sequence.
JP120487.1:119-142
ATTTTCAAGGACATAAGGAGGTATTACTGC119GAGTTCTGTGGTATTTGCCGCTCTAAGAAAGCACTTATCTCCTCCCATGTCCTT
Ipomoea trifida cultivar NCNSP0306 chromosome 9.
CP025652.1:6074148-6074171
AAGGACATGGGAGGAGATAAGTGCTTTCTT6074148AGAGCGGCAAATACCACAGAACTCGCAGTAATACCTCCTTATGTCCTTGAAAAT
Ipomoea triloba cultivar NCNSP0323 chromosome 9.
CP025668.1:7329456-7329479
AAGGACATGGGAGGAGATGAGTGCTTTCTT7329456AGAGCGGCAAATACCACAGAACTCGCAGTAATATCTCCTTATGTCCTTGAAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gagttctgtggtatttgccgctct
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gagttctgtggtatttgccgctct | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.197 | 0.189 | search_plus_done; http://172.18.8.135:50400/match?q=GAGTTCTGTGGTATTTGCCGCTCT&k=0&no_gap=0&offset=0&limit=50
0.217 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=AGAGCGGCAAATACCACAGAACTC&k=0&no_gap=0&offset=0&limit=46
0.218 | 0.001 | cgi_end;

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