GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 16:08:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 4.
CP141930.1:25290833-25290852
TCACAGGTAAATACCTATCTATGTATCTCC25290833GATTGTTCGGGATTTCGACTCCGCTCGTCTCTGTTCTTCCAACGTTGAAA
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141956.1:24029512-24029531
TCACAGGTAAATACCTATCTATGTATCTCC24029512GATTGTTCGGGATTTCGACTCCGCTCGTTTCTGTTCTTCCAACGTCGAAA
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141973.1:23707451-23707470
TCACAGGTAAATACCTATCTATGTATCTCC23707451GATTGTTCGGGATTTCGACTCCGCTCATTTCTGTTCTTCCAACGTCGAAA
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143361.1:24856688-24856707
TCACAGGTAAATACCTATCTATGTATCTCC24856688GATTGTTCGGGATTTCGACTCCGCTCGTTTCTGTTCTTCCAACGTTGAAA
Malus sylvestris genome assembly, chromosome: 4.
OU696506.1:25112820-25112839
TCACAGGTAAATACTTATCTATGTATCTCC25112820GATTGTTCGGGATTTCGACTCCGCTCGTTTCTGTTCTTCCAACGTTGAAA
Malus domestica genome assembly, chromosome: 4.
OU696680.1:25129229-25129248
TCACAGGTAAATACCTATCTATGTATCTCC25129229GATTGTTCGGGATTTCGACTCCGCTCGTTTCTGTTCTTCCAACGTTGAAA
Malus domestica genome assembly, chromosome: 4.
OU744545.1:25083998-25084017
TCACAGGTAAATACCTATCTATGTATCTCC25083998GATTGTTCGGGATTTCGACTCCGCTCGTTTCTGTTCTTCCAACGTTGAAA
Malus domestica genome assembly, chromosome: 4.
OU744956.1:25373772-25373791
TCACAGGTAAATACCTATCTATGTATCTCC25373772GATTGTTCGGGATTTCGACTCCGCTCGTCTCTGTTCTTCCAACGTTGAAA
Malus domestica genome assembly, chromosome: 4.
OU744994.1:25187400-25187419
TCACAGGTAAATACCTATCTATGTATCTCC25187400GATTGTTCGGGATTTCGACTCCGCTCGTTTCTGTTCTTCCAACGTTGAAA
Mecyna flavalis genome assembly, chromosome: 14.
OX439407.1:10703992-10704011
ATTATCATCTCTGTCTCAGATGGCTCTCCA10703992GATTGTTCGGGATTTCGACTGAGAGCATCGACGTGCATCATTTTACAGCC
Mecyna flavalis genome assembly, chromosome: 15.
OX439408.1:3932101-3932120
ATTATCATCTCTGTCTCAGATGGCTCTCCA3932101GATTGTTCGGGATTTCGACTGAGAGCATCGACGTGCATCATTTTACAGCC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A08.
HG996472.1:13317395-13317414
ATAAACGCCCTCGAGCGGAGGGAAGAAGGC13317395AGTCGAAATCCCGAACAATCGCCACCGCGATCTCTAACTTAATCGCCGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gattgttcgggatttcgact
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gattgttcgggatttcgact | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.112 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=GATTGTTCGGGATTTCGACT&k=0&no_gap=0&offset=0&limit=50
0.148 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=AGTCGAAATCCCGAACAATC&k=0&no_gap=0&offset=0&limit=39
0.149 | 0.001 | cgi_end;

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