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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 06:50:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 7801 from patent US 10760088.
MV637540.1:485-508
GGGCAGCAACCTTCTCATCAAGGTGCTTGG485GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
Sequence 7801 from patent US 11111499.
MY429423.1:485-508
GGGCAGCAACCTTCTCATCAAGGTGCTTGG485GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
010318AAUA005636HT (AAUA) Royal Gala 87 DAFB fruit cortex Malus domestica cDNA clone AAUA005636, mRNA sequence.
CN885449.1:479-502
GGGCAGCAACCTTCTCATCAAGGTGCTTGG479GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
010318AAUA005367HT (AAUA) Royal Gala 87 DAFB fruit cortex Malus domestica cDNA clone AAUA005367, mRNA sequence.
CN885556.1:479-502
GGGCAGCAACCTTCTCATCAAGGTGCTTGG479GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
010317AAUA004126HT (AAUA) Royal Gala 87 DAFB fruit cortex Malus domestica cDNA clone AAUA004126, mRNA sequence.
CN886287.1:479-502
GGGCAGCAACCTTCTCATCAAGGTGCTTGG479GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
010316AAUA003303HT (AAUA) Royal Gala 87 DAFB fruit cortex Malus domestica cDNA clone AAUA003303, mRNA sequence.
CN886782.1:479-502
GGGCAGCAACCTTCTCATCAAGGTGCTTGG479GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
010316AAUA003261HT (AAUA) Royal Gala 87 DAFB fruit cortex Malus domestica cDNA clone AAUA003261, mRNA sequence.
CN886813.1:479-502
GGGCAGCAACCTTCTCATCAAGGTGCTTGG479GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
010316AAUA003178HT (AAUA) Royal Gala 87 DAFB fruit cortex Malus domestica cDNA clone AAUA003178, mRNA sequence.
CN886868.1:479-502
GGGCAGCAACCTTCTCATCAAGGTGCTTGG479GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
010316AAUA003130HT (AAUA) Royal Gala 87 DAFB fruit cortex Malus domestica cDNA clone AAUA003130, mRNA sequence.
CN886908.1:479-502
GGGCAGCAACCTTCTCATCAAGGTGCTTGG479GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
010701AAZA003747HT (AAZA) M9 xylem Malus domestica cDNA clone AAZA003747, mRNA sequence.
CN897828.1:468-491
GGGCAGCAACCTTCTCATCAAGGTGCTTGG468GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
Mdlv4002b14.y1 Mdlv Malus domestica cDNA clone Mdlv4002b14 5' similar to SW:SAHH_CATRO P35007 ADENOSYLHOMOCYSTEINASE, mRNA sequence.
CV121984.1:481-504
GGGCAGCAACCTTCTCATCAAGGTGCTTGG481GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
Mdlv4001k24.y1 Mdlv Malus domestica cDNA clone Mdlv4001k24 5' similar to SW:SAHH_CATRO P35007 ADENOSYLHOMOCYSTEINASE, mRNA sequence.
CV122121.1:487-510
GGGCAGCAACCTTCTCGTCAAGGTGCTTAG487GCAAGACATACACCTTCTTCTCGTACTTGCCAGACTTCCTTTCGTTCCACAACT
Mdlv4003k22.y1 Mdlv Malus domestica cDNA clone Mdlv4003k22 5' similar to SW:SAHH_CATRO P35007 ADENOSYLHOMOCYSTEINASE, mRNA sequence.
CV122341.1:481-504
GGGCAGCAACCTTCTCATCAAGGTGCTTGG481GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
Mdlv4010g17.y1 Mdlv Malus domestica cDNA clone Mdlv4010g17 5' similar to SW:SAHH_CATRO P35007 ADENOSYLHOMOCYSTEINASE, mRNA sequence.
CV525124.1:494-517
GGGCAGCAACCTTCTCATCAAGGTGCTTGG494GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
Mdlv4011c09.y1 Mdlv Malus domestica cDNA clone Mdlv4011c09 5' similar to SW:SAHH_CATRO P35007 ADENOSYLHOMOCYSTEINASE, mRNA sequence.
CV525320.1:482-505
GGGCAGCAACCTTCTCATCAAGGTGCTTGG482GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
Mdlv4011c14.y1 Mdlv Malus domestica cDNA clone Mdlv4011c14 5' similar to SW:SAHH_CATRO P35007 ADENOSYLHOMOCYSTEINASE, mRNA sequence.
CV525377.1:494-517
GGGCAGCAACCTTCTCATCAAGGTGCTTGG494GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
Mdlv4012n14.y1 Mdlv Malus domestica cDNA clone Mdlv4012n14 5' similar to SW:SAHH_PETCR Q01781 ADENOSYLHOMOCYSTEINASE, mRNA sequence.
CV525676.1:482-505
GGGCAGCAACCTTCTCATCAAGGTGCTTGG482GCAAGACATACACCTTCTTCTCGTAACTGCCGGACTTCCTCTCATTCCACAACT
Mdlr7004K24.g1 Apple_EST_Mdlr Malus domestica cDNA similar to gb|AAO89237.1| adenosylhomocysteinase [Medicago truncatula], mRNA sequence.
DR992912.1:469-492
GGGCAGCAACCTTCTCATCAAGGTGCTTGG469GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
Solanum melongena mRNA, clone: AE004N18, 3'end, expressed in ovary at anthesis.
FS002314.1:389-412
GAGCAGCAACCTTCTCGTCGAGGTGCTTTG389GCAAGACATACACCTTCTTCTCGTATTTGCCACTGTTCTTTTCCTTCCACAACT
Solanum melongena mRNA, clone: CAL01L02, 3'end, expressed in callus at 3d after subculture.
FS008408.1:422-445
GAGCAGCAACCTTCTCGTCGAGGTGCTTTG422GCAAGACATACACCTTCTTCTCGTATTTGCCACTGTTCTTTTCCTTCCACAACT
Solanum melongena mRNA, clone: CHX05F14, 3'end, expressed in ovary at 24h after anthesis.
FS014190.1:324-347
GAGCAGCAACCTTCTCGTCGAGGTGCTTTG324GCAAGACATACACCTTCTTCTCGTATTTGCCACTGTTCTTTTCCTTCCACAACT
Solanum melongena mRNA, clone: LS001F05, 3'end, expressed in ovary at anthesis.
FS017899.1:421-444
GAGCAGCAACCTTCTCGTCGAGGTGCTTTG421GCAAGACATACACCTTCTTCTCGTATTTGCCACTGTTCTTTTCCTTCCACAACT
Solanum melongena mRNA, clone: PED04E18, 3'end, expressed in peduncle at anthesis.
FS035295.1:420-443
GAGCAGCAACCTTCTCGTCGAGGTGCTTTG420GCAAGACATACACCTTCTTCTCGTATTTGCCACTGTTCTTTTCCTTCCACAACT
Solanum melongena mRNA, clone: PLA02H17, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS043512.1:394-417
GAGCAGCAACCTTCTCGTCGAGGTGCTTTG394GCAAGACATACACCTTCTTCTCGTATTTGCCACTGTTCTTTTCCTTCCACAACT
Solanum melongena mRNA, clone: SmFL40G10, 3'end.
FS093973.1:390-413
GAGCAGCAACCTTCTCGTCGAGGTGCTTTG390GCAAGACATACACCTTCTTCTCGTATTTGCCACTGTTCTTTTCCTTCCACAACT
Solanum melongena mRNA, clone: YFR03J03, 3'end, expressed in fruit at 2w after anthesis.
FS096051.1:388-411
GAGCAGCAACCTTCTCGTCGAGGTGCTTTG388GCAAGACATACACCTTCTTCTCGTATTTGCCACTGTTCTTTTCCTTCCACAACT
KS14031F08 KS14 Capsicum annuum cDNA, mRNA sequence.
GD060320.1:425-448
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG425GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS17008E02 KS17 Capsicum annuum cDNA, mRNA sequence.
GD076227.1:418-441
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG418GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS17027F05 KS17 Capsicum annuum cDNA, mRNA sequence.
GD078041.1:430-453
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG430GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS20029C10 KS20 Capsicum annuum cDNA, mRNA sequence.
GD095984.1:423-446
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG423GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS22001F04 KS22 Capsicum annuum cDNA, mRNA sequence.
GD105119.1:421-444
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG421GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS22006C02 KS22 Capsicum annuum cDNA, mRNA sequence.
GD105551.1:421-444
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG421GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS22020C12 KS22 Capsicum annuum cDNA, mRNA sequence.
GD106863.1:421-444
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG421GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCC
KS22041A01 KS22 Capsicum annuum cDNA, mRNA sequence.
GD108776.1:421-444
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG421GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS22046E02 KS22 Capsicum annuum cDNA, mRNA sequence.
GD109287.1:421-444
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG421GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS22051B02 KS22 Capsicum annuum cDNA, mRNA sequence.
GD109722.1:421-444
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG421GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS22054E06 KS22 Capsicum annuum cDNA, mRNA sequence.
GD110044.1:421-444
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG421GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS22060F04 KS22 Capsicum annuum cDNA, mRNA sequence.
GD110611.1:421-444
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG421GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS23030G08 KS23 Capsicum annuum cDNA, mRNA sequence.
GD113832.1:432-455
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG432GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS23045A07 KS23 Capsicum annuum cDNA, mRNA sequence.
GD115179.1:430-453
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG430GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS24010B01 KS24 Capsicum annuum cDNA, mRNA sequence.
GD118782.1:419-442
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG419GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS24023H07 KS24 Capsicum annuum cDNA, mRNA sequence.
GD120073.1:425-448
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG425GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS24029B11 KS24 Capsicum annuum cDNA, mRNA sequence.
GD120562.1:320-343
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG320GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS24029D02 KS24 Capsicum annuum cDNA, mRNA sequence.
GD120577.1:423-446
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG423GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS24033H01 KS24 Capsicum annuum cDNA, mRNA sequence.
GD120989.1:433-456
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG433GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS24060G01 KS24 Capsicum annuum cDNA, mRNA sequence.
GD123492.1:423-446
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG423GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS25043L15 KS25 Capsicum annuum cDNA, mRNA sequence.
GD127707.1:379-402
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG379GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
KS25047B19 KS25 Capsicum annuum cDNA, mRNA sequence.
GD128023.1:425-448
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG425GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
CS01019F05 Hotpepper under oxidative stress Capsicum annuum cDNA 5', mRNA sequence.
GO344818.1:454-477
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG454GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
Pyrus pyrifolia mRNA, clone: NFR1_03_32, 5' end sequence, expressed in fruit.
HX745905.1:454-477
GGGCAGCAACCTTCTCATCAAGGTGCTTAG454GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
Mado-00-K2-G2-001_G11 K2-G2 Malus domestica cDNA similar to s-adenosyl-l-homocysteine hydrolase, mRNA sequence.
JZ481957.1:136-159
GGGCAGCAACCTTCTCGTCAAGGTGCTTAG136GCAAGACATACACCTTCTTCTCGT
Sm30KKM03F01 Library from 30 dpa fruit of eggplant cv. KKM1 Solanum melongena cDNA, mRNA sequence.
JZ716175.1:65-88
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG65GCAAGACATACACCTTCTTCTCGTATTTGCCACTGTTCTTTTCCTTCCACAACT
TSA: Pyrus communis mRNA, contig: lc3038.
FX611625.1:355-378
GGGCAGCAACCTTCTCATCAAGGTGCTTAG355GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
TSA: Pyrus communis mRNA, contig: lc39745.
FX647126.1:154-177
AANCAGCAACCTTCTCATCAAGGTGCTTAG154GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
TSA: Pyrus communis mRNA, contig: lc45007.
FX651737.1:174-197
GGGCAGCAACCTTCTCATCAAGGTGCTTAG174GCAAGACATACACCTTCTTCTCGTACTTGCCGGACTTCCTCTCATTCCACAACT
TSA: Capsicum annuum MGMT_Contig10525, mRNA sequence.
JW060769.1:403-426
GGGTAGCAACCTTCTCGTCGAGGTGTTTTG403GCAAGACATACACCTTCTTCTCGTATTTGCCACTGC
TSA: Capsicum annuum MGMT_Contig23621, mRNA sequence.
JW073865.1:762-785
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG762GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:286816708-286816731
GGGTAGCAACCTTCTCGTCGAGGTGTTTTG286816708GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:286847257-286847280
GGGCAGCAACCTTCTCGTCGAGGTGCTTTG286847257GCAAGACATACACCTTCTTCTCGTATTTGCCACTGCTCTTCTCATTCCACAACT
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141922.1:37622059-37622082
GGGCAGCAACCTTCTCGTCAAGGTGCTTAG37622059GCAAGACATACACCTTCTTCTCGTACTTGCCAGCCTTCCTTTCGTTCCACAACT
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141939.1:40319998-40320021
GGGCAGCAACCTTCTCGTCAAGGTGCTTAG40319998GCAAGACATACACCTTCTTCTCGTACTTGCCAGACTTCCTTTCGTTCCACAACT
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141965.1:2496429-2496452
GGGCAGCAACCTTCTCGTCAAGGTGCTTAG2496429GCAAGACATACACCTTCTTCTCGTACTTGCCAGCCTTCCTTTCGTTCCACAACT
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143370.1:39327996-39328019
GGGCAGCAACCTTCTCGTCAAGGTGCTTAG39327996GCAAGACATACACCTTCTTCTCGTACTTGCCAGACTTCCTTTCGTTCCACAACT
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143387.1:34218639-34218662
GGGCAGCAACCTTCTCGTCAAGGTGCTTAG34218639GCAAGACATACACCTTCTTCTCGTACTTGCCAGACTTCCTTTCGTTCCACAACT
Malus sylvestris genome assembly, chromosome: 13.
OU696515.1:38838240-38838263
GGGCAGCAACCTTCTCGTCAAGGTGCTTAG38838240GCAAGACATACACCTTCTTCTCGTACTTGCCAGACTTCCTTTCGTTCCACAACT
Malus domestica genome assembly, chromosome: 13.
OU696689.1:39158757-39158780
GGGCAGCAACCTTCTCGTCAAGGTGCTTAG39158757GCAAGACATACACCTTCTTCTCGTACTTGCCAGACTTCCTTTCGTTCCACAACT
Malus domestica genome assembly, chromosome: 13.
OU744554.1:39039436-39039459
GGGCAGCAACCTTCTCGTCAAGGTGCTTAG39039436GCAAGACATACACCTTCTTCTCGTACTTGCCAGACTTCCTTTCGTTCCACAACT
Malus domestica genome assembly, chromosome: 13.
OU744965.1:37922762-37922785
GGGCAGCAACCTTCTCGTCAAGGTGCTTAG37922762GCAAGACATACACCTTCTTCTCGTACTTGCCAGACTTCCTTTCGTTCCACAACT
Hedera helix genome assembly, chromosome: 18.
OX359281.1:27770749-27770772
GAGCTGCGACCTTCTCGTCAAGGTGCTTCG27770749GCAAGACATACACCTTCTTCTCGTACTTCCCGGTGCTCCTTTCCTTCCACAACT
Crataegus laevigata genome assembly, chromosome: 3.
OY756940.1:35501548-35501571
GGGCAGCAACCTTCTCGTCAAGGTGCTTAG35501548GCAAGACATACACCTTCTTCTCGTACTTGCCAGACTTCCTTTCGTTCCACAACT
Persicaria maculosa genome assembly, chromosome: 9.
OY998259.1:1136431-1136454
GGGCAGCAACCTTCTCGTCTAGGTGCTTGG1136431GCAAGACATACACCTTCTTCTCGTACTTGCCAGAGGCCTTCTCCTTCCAGAGCT
Persicaria maculosa genome assembly, chromosome: 9.
OY998259.1:1140261-1140284
GGGCAGCAACCTTCTCATCGAGGTGCTTGG1140261GCAAGACATACACCTTCTTCTCGTACTTGCCAGAGGCCTTCTCCTTCCAGAGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gcaagacatacaccttcttctcgt
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gcaagacatacaccttcttctcgt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
3.754 | 3.745 | search_plus_done; http://172.18.8.135:50400/match?q=GCAAGACATACACCTTCTTCTCGT&k=0&no_gap=0&offset=0&limit=50
3.824 | 0.070 | search_minus_done; http://172.18.8.135:50400/match?q=ACGAGAAGAAGGTGTATGTCTTGC&k=0&no_gap=0&offset=0&limit=0
3.824 | 0.000 | cgi_end;

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