GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:50:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:114437-114456
AGGTATTGAGTTTCTAATCAAGGCAAACAA114437GGTGGGAGATTCACCAGAGGAAATAGCAGCTTTTTTGAAAGATGCATCGG
Paenibacillus sp. 481 chromosome, complete genome.
CP075175.1:3592848-3592867
TTACACCGGCTATTTGACGATTGAGCGTGA3592848GGTGGGAGATTCACCAGAGGCTGATATTCGTAAAGCAGTACAATTTATTA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7191.
FX691751.1:3571-3590
CCGATGCATCTTTCAAAAAAGCTGCTATTT3571CCTCTGGTGAATCTCCCACCTTGTTTGCCTTGATAAGAAACTCAATACCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_27478.
FX728515.1:1430-1449
CCGATGCATCTTTCAAAAAAGCTGCTATTT1430CCTCTGGTGAATCTCCCACCTTGTTTGCCTTGATTAGAAACTCAATACCT
BOT01-98F7TR BOT01 Brassica oleracea genomic clone BOT01-98F7, genomic survey sequence.
FI748401.1:378-397
CCGATGCATCTTTCAAAAAAGCTGCTATTT378CCTCTGGTGAATCTCCCACCTTGTTTGCCTTGATTAGAAACTCAATACCT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A10 clone KBrB119O22, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC234732.1:79966-79985
CCGATGCATCTTTCAAAAAAGCTGCTATTT79966CCTCTGGTGAATCTCCCACCTTGTTTGCCTTGATAAGAAACTCAATACCT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69481675-69481694
CCGATGCATCTTTCAAAAAAGCTGCTATTT69481675CCTCTGGTGAATCTCCCACCTTGTTTGCCTTGATTAGAAACTCAATACCT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41562457-41562476
CCAATGCATCTTTCAAAAAAGCTGCTATTT41562457CCTCTGGTGAATCTCCCACCTTGTTTGCCTTGATTAGAAACTCAATACCT
Brassica rapa genome, scaffold: A09.
LR031568.1:57605643-57605662
CCGATGCATCTTTCAAAAAAGCTGCTATTT57605643CCTCTGGTGAATCTCCCACCTTGTTTGCCTTGATTAGAAACTCAATACCT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50800219-50800238
CCAATGCATCTTTCAAAAAAGCTGCTATTT50800219CCTCTGGTGAATCTCCCACCTTGTTTGCCTTGATTAGAAACTCAATACCT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:68129128-68129147
CCGATGCATCTTTCAAAAAAGCTGCTATTT68129128CCTCTGGTGAATCTCCCACCTTGTTTGCCTTGATTAGAAACTCAATACCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ggtgggagattcaccagagg
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ggtgggagattcaccagagg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.098 | 0.089 | search_plus_done; http://172.18.8.135:50400/match?q=GGTGGGAGATTCACCAGAGG&k=0&no_gap=0&offset=0&limit=50
0.189 | 0.091 | search_minus_done; http://172.18.8.135:50400/match?q=CCTCTGGTGAATCTCCCACC&k=0&no_gap=0&offset=0&limit=48
0.195 | 0.006 | cgi_end;

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