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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-12 07:34:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JP 2007082429-A/8: Detection method of Triticeae alien chromosome in wheat.
DJ022924.1:803-826
TCGCTACAAACTTCTTGATCTTCTCATACT803GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTTCTCGAGCGGGTCTGACA
TaLr1168G10R TaLr1 Triticum aestivum cDNA clone TaLr1168G10 5', mRNA sequence.
BG908501.1:581-604
TCGCTACAAACTTCTTGATCTTCTCATACT581GTCCTTCACTAACAACTGGCCCAAGCCTGCATCCCTCCTCGAGAGGGTCTGACA
Ta01_10b12_R Ta01_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_heads Triticum aestivum cDNA clone Ta01_10b12, mRNA sequence.
BI750644.1:442-465
TCGCTACAAACTTCTTGATCTTCTCATACT442GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCCTCGAGCGGGTCTGACA
Hordeum vulgare subsp. vulgare cv.Haruna Nijo cDNA clone:bags32a22, 3' mRNA sequence.
BJ466421.1:582-605
TCGCTACGAACTTCTTGATCTTCTCATACT582GTCCTTCACTAACAACTGGCCCAAGCCTGCAAC
Hordeum vulgare subsp. vulgare cv.Haruna Nijo cDNA clone:bags38d10, 3' mRNA sequence.
BJ468318.1:615-638
TCGCTACGAACTTCTTGATCTTCTCATACT615GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTTCTCGAGCGGGTCTGACA
Hordeum vulgare subsp. vulgare cv.Haruna Nijo cDNA clone:baal30n10, 3' mRNA sequence.
BJ475971.1:676-699
TCGCTACGAACTTCTTGATCTTCTCATACT676GTCCTTCACTAACAACTGGCCCAAGCCTGCAAC
SCSGLR1025E10.g LR1 Saccharum hybrid cultivar SP80-3280 cDNA clone SCSGLR1025E10 5', mRNA sequence.
CA126197.1:636-659
TCGATATGAACTTCTTAATCTTCTCATACT636GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCCTTTTCA
RBE_2 GeneTag1 Zea mays cDNA, mRNA sequence.
CD941477.1:16-39
TAATCTTCTCATACT16GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGTGGATC
SBS_3 GeneTag2 Zea mays cDNA, mRNA sequence.
CD954990.1:16-39
TAATCTTCTCATACT16GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGTGGATC
QAU1a07.yg QAU Zea mays cDNA clone QAU1a07, mRNA sequence.
CD989666.1:443-466
TCGATATGAACTTCTTAATCTTCTCATACT443GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGTGGATCCGAAA
Triticum aestivum cDNA clone rwhdp16l14 3', Y.Ogihara unpublished cDNA library Wh_DPA20, mRNA sequence.
CJ525409.1:589-612
TCGCTACAAACTTCTTGATCTTCTCATACT589GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCT
Triticum aestivum cDNA clone rwhdp17d08 3', Y.Ogihara unpublished cDNA library Wh_DPA20, mRNA sequence.
CJ525545.1:657-680
TCGCTACAAACTTCTTGATCTTCTCATACT657GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCCTCGAGCGGGTCTGACA
Triticum aestivum cDNA clone rwhdp18e11 3', Y.Ogihara unpublished cDNA library Wh_DPA20, mRNA sequence.
CJ525848.1:590-613
TCGCTACAAACTTCTTGATCTTCTCATACT590GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCCTCGAGCGGGTCTGACA
Triticum aestivum cDNA clone rwhem8p02 3', Y.Ogihara unpublished cDNA library Wh_EM, mRNA sequence.
CJ544523.1:560-583
TCGCTACAAACTTCTTGATCTTCTCATACT560GTCCTTCACTAACAACTGGCCCAAGCCTGCATCCCTCCTCGAGAGGGTCTGACA
Triticum aestivum cDNA clone rwhsc7i14 3', Y.Ogihara unpublished cDNA library Wh_SHC, mRNA sequence.
CJ591068.1:618-641
TCGCTACAAACTTCTTGATCTTCTCATACT618GTCCTTCACTAACAACTGGCCCAAGCCTGCATCCCTCCTCGAGAGGGTCTGACA
Triticum aestivum cDNA clone rwhv16n12b21 3', Y.Ogihara unpublished cDNA library Wh_V4816, mRNA sequence.
CJ597356.1:590-613
TCGCTACAAACTTCTTGATCTTCTCATACT590GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCCTCGAGCGGGTCTGACA
Triticum aestivum cDNA clone rwhvd14m22 3', Y.Ogihara unpublished cDNA library Wh_VWD, mRNA sequence.
CJ612874.1:320-343
TCGCTACAAACTTCTTGATCTTCTCATACT320GTCCTTCACTAACAACTGGCCCAAGCCTGCATCCCTCCTCGAGAGGGTCTGACA
Triticum aestivum cDNA clone whei16m03 5', Y.Ogihara unpublished cDNA library Wh_EMI, mRNA sequence.
CJ644307.1:587-610
TCGCTACAAACTTCTTGATCTTCTCATACT587GTCCTTCACTAACAACTGGCCCAAGCCTGCATCCCTCCTCNAGGGGGGGCCC
zmrsub1_0B10-007-d11.s3 zmrsub1 Zea mays cDNA 3', mRNA sequence.
CK827234.1:604-627
TCGATATGAACTTCTTAATCTTCTCATACT604GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGTGGATCCGAAA
ZM_BFb0070J05.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
DR827369.1:672-695
TCGATATGAACTTCTTAATCTTCTCATACT672GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGTGGATCCGAAA
ZM_BFb0098A05.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
DT640418.1:671-694
TCGATATGAACTTCTTAATCTTCTCATACT671GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGTGGATCCGAAA
ZM_BFb0119H18.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
DT652850.1:606-629
TCGATATGAACTTCTTAATCTTCTCATACT606GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGTGGATCCGAAA
ZM_BFb0183O06.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
DV506241.1:606-629
TCGATATGAACTTCTTAATCTTCTCATACT606GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGTGGATCCGAAA
ZM_BFb0192I06.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
DV512034.1:672-695
TCGATATGAACTTCTTAATCTTCTCATACT672GTCCTTCACTAACAACTGGCCCAA
ZM_BFb0307L17.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
EB401578.1:672-695
TCGATATGAACTTCTTAATCTTCTCATACT672GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGTGGATCCGAAA
ZM_BFb0335N19.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
EB674338.1:606-629
TCGATATGAACTTCTTAATCTTCTCATACT606GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGTGGATCCGAAA
ZM_BFb0344G17.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
EB701970.1:672-695
TCGATATGAACTTCTTAATCTTCTCATACT672GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTC
ZM_BFc0010F05.f ZM_BFc Zea mays cDNA clone ZM_BFc0010F05 3', mRNA sequence.
EC876934.2:672-695
TCGATATGAACTTCTTAATCTTCTCATACT672GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGTGG
ZM_BFc0130E22.f ZM_BFc Zea mays cDNA clone ZM_BFc0130E22 3', mRNA sequence.
EE160603.2:679-702
TCGATATGAACTTCTTAATCTTCTCATACT679GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGTGGATCCGAAA
ZM_BFc0145N15.f ZM_BFc Zea mays cDNA clone ZM_BFc0145N15 3', mRNA sequence.
EE169991.1:630-653
TCGATATGAACTTCTTAATCTTCTCATACT630GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGTGGATCCGAAA
BG01008B2E06.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG01008B2E06.r1, mRNA sequence.
EG379119.1:654-677
TTGATATGAACTTCTTAATCTTCTCATACT654GTCCTTCACTAACAACTGGCCCAAGCCTACAACCCTCCTCAAGCGGATCTGACA
RUS133B01w HZ Hordeum vulgare subsp. vulgare cDNA clone HZ38L23, mRNA sequence.
FD525717.1:609-632
TCGCTACGAACTTCTTGATCTTCTCATACT609GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCCTCGAGCGGGTCTGACA
BG02011A1F07.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone BG02011A1F07.r1, mRNA sequence.
FF342013.1:655-678
TTGCTATGAACTTCTTAATCTTCTCATACT655GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCC
BG02010A2D12.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone BG02010A2D12.r1, mRNA sequence.
FF344251.1:653-676
TTGCTATGAACTTCTTAATCTTCTCATACT653GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCCTCAAGCGGATCTGACA
BG02022A2F09.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone BG02022A2F09.f1, mRNA sequence.
FF350854.1:684-707
TTGCTATGAACTTCTTAATCTTCTCATACT684GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCCTCAAGCGGATCTGACA
BG02026A1F03.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone BG02026A1F03.r1, mRNA sequence.
FF353985.1:657-680
TTGCTATGAACTTCTTAATCTTCTCATACT657GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCCTCAAGCGGATCTGACA
TSL-2623 TT7LS Triticum dicoccoides cDNA, mRNA sequence.
FL583291.1:442-465
TCGCTACAAACTTCTTGATCTTCTCATACT442GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCCTCGAGCGGGTCTGACA
TSL-1105 TT7LS Triticum dicoccoides cDNA, mRNA sequence.
FL584111.1:442-465
TCGCTACAAACTTCTTGATCTTCTCATACT442GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCCTCGAGCGGGTCTGACA
CLS_CLiFpEfSpn_126a6_1_m24cLibkit3LD_G12 CLS_CLiFpEfSPn_plant Festuca pratensis cDNA clone 126m24 3', mRNA sequence.
GO847161.1:644-667
TTGATACAAACTTCTTAATCTTCTCATACT644GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGCGGGTCTGACA
CCYO8512.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDNA clone CCYO8512 3', mRNA sequence.
GT825408.1:626-649
TTGCTACAAACTTCTTAATCTTCTCATACT626GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGCGGATCTGACA
CCYP8825.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA clone CCYP8825 3', mRNA sequence.
GT852130.1:622-645
TTGCTACAAACTTCTTAATCTTCTCATACT622GTCCTTCACTAACAACTGGCCCAAGCCTGCACCCTCTTCAAGCGGATCTGACAC
BG04069B2H08.r1 BG04- primary and normalized libraries Dactylis glomerata cDNA, mRNA sequence.
HO154968.1:576-599
TTGATACGAACTTCTTAATCTTCTCATACT576GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCTTCAAGCGGGTCTGACA
BG04073B2E04.r1 BG04- primary and normalized libraries Dactylis glomerata cDNA, mRNA sequence.
HO157525.1:538-561
TTGATACGAACTTCTTAATCTTCTCATACT538GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCTTCAAGCGGGTCTGACA
BG04091B1D10.r1 BG04- primary and normalized libraries Dactylis glomerata cDNA, mRNA sequence.
HO171346.1:646-669
TTGATACGAACTTCTTAATCTTCTCATACT646GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCTTCAAGC
Triticum aestivum cDNA, clone: rwhxr1095a22, 3' end sequence.
HX125694.1:563-586
TCGCTACAAACTTCTTGATCTTCTCATACT563GTCCTTCACTAACAACTGGCCCAAGCCTGCATCCCTCCTCGAGAGGGTCTGACA
Triticum aestivum cDNA, clone: rwhxr6011e02, 3' end sequence.
HX129493.1:563-586
TCGCTACAAACTTCTTGATCTTCTCATACT563GTCCTTCACTAACAACTGGCCCAAGCCTGCATCCCTCCTCGAGAGGGTCTGACA
Triticum aestivum cDNA, clone: rwhxr2006k04, 3' end sequence.
HX136766.1:536-559
TCGCTACAAACTTCTTGATCTTCTCATACT536GTCCTTCACTAACAACTGGCCCAAGCCTGCATCCCTCCTCGAGAGGGTCTGACA
Triticum aestivum cDNA, clone: rwhxr28038k12, 3' end sequence.
HX137187.1:560-583
TCGCTACAAACTTCTTGATCTTCTCATACT560GTCCTTCACTAACAACTGGCCCAAGCCTGCATCCCTCCTCGAGAGGGTCTGACA
Triticum aestivum cDNA, clone: rwhxr4005l02, 3' end sequence.
HX137913.1:585-608
TCGCTACAAACTTCTTGATCTTCTCATACT585GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCCTCGAGCGGGTCTGACA
Triticum aestivum cDNA, clone: rwhxs23063b13, 3' end sequence.
HX145521.1:578-601
TCGCTACAAATTTCTTGATCTTCTCATACT578GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCCTCGAGCGGGTCTGACA
Triticum aestivum cDNA, clone: rwhxs10090g24, 3' end sequence.
HX151982.1:586-609
TCGCTACAAATTTCTTGATCTTCTCATACT586GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCCTCGAGCGGGTCTGACA
TSA: Triticum aestivum cultivar Kukri KukriC229_9 mRNA sequence.
JP827486.1:699-722
TCGCTACAAACTTCTTGATCTTCTCATACT699GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCCTCGAGCGGGTCTGACA
TSA: Triticum aestivum cultivar Kukri KukriC229_11 mRNA sequence.
JP827488.1:395-418
TCGCTACAAACTTCTTGATCTTCTCATACT395GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCCTCGAGCGGGTCTGACA
TSA: Triticum aestivum cultivar Kukri KukriC229_15 mRNA sequence.
JP827491.1:687-710
TCGCTACAAACTTCTTGATCTTCTCATACT687GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCCTCGAGCGGGTCTGACA
TSA: Triticum aestivum cultivar Kukri KukriC229_31 mRNA sequence.
JP827498.1:308-331
TCGCTACAAACTTCTTGATCTTCTCATACT308GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCCTCGAGCGGGTCTGACA
TSA: Triticum aestivum cultivar Kukri KukriC229_56 mRNA sequence.
JP827502.1:156-179
TCGCTACAAACTTCTTGATCTTCTCATACT156GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCCTCGAGCGGGTCTGACA
TSA: Triticum aestivum Ta_Contig7302.ansp mRNA sequence.
JV870257.1:741-764
TCGCTACAAACTTCTTGATCTTCTCATACT741GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCTTCCTCGAGCGGGTCTGACA
Hordeum vulgare subsp. vulgare cv. Morex GSS, clone HVVMRXALLeA0301H16_f.
HF317048.1:203-226
GAATTTATATAAAGTTAACATGTATTACCT203GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCCTCGAGCGGGTCTGACA
Hordeum vulgare subsp. vulgare cultivar Morex clone HVVMRXALLhA0591A04, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces.
AC247440.1:65094-65117
GAATTTATATAAAGTTAACATGTATTACCT65094GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCCTCGAGCGGGTCTGACA
Hordeum vulgare subsp. vulgare cultivar Morex clone BAC 0198I19, *** SEQUENCING IN PROGRESS ***, 37 unordered pieces.
AC262211.1:19697-19720
GAATTTATATAAAGTTAACATGTATTACCT19697GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCCTCGAGCGGGTCTGACA
Aegilops umbellulata cultivar TA1851 chromosome 4U.
CP136057.1:23571115-23571138
GAATTTATATAAAGCTAACATGTAGTACCT23571115GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCCTCGAGCGGGTCTGACA
Avena insularis genome assembly, chromosome: 7C.
OU342344.1:416563165-416563188
TGAATTTAAATAAAGTAACATGTAGTACCT416563165GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGCGGGTCTGACA
Avena sativa genome assembly, chromosome: 7C.
OU342391.1:445836594-445836617
TGAATTTAAATAAAGTAACATGTAGTACCT445836594GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGCGGGTCTGACA
Avena eriantha genome assembly, chromosome: 1C.
OU342740.1:250224824-250224847
TGAATTTAAATAAAGTAACATGTAGTACCT250224824GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGCGGGTCTGGCA
Avena eriantha genome assembly, chromosome: 2C.
OU342741.1:73224471-73224494
TGAATTTAAATAAAGTAACATGTAGTATCT73224471GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGCGGGTCTGACA
Avena eriantha genome assembly, chromosome: 4C.
OU342743.1:159850306-159850329
TGAATTTAAATAAAGTAACATGTAGTACCT159850306GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGCGGGTCTGACA
Avena sativa genome assembly, chromosome: 14.
OV702292.1:489896162-489896185
TGAATTTAAATAAAGTAACATGTAGTACCT489896162GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCTTCAAGCGGGTCTGACA
Hordeum bulbosum genome assembly, chromosome: 6H_1.
OY737871.1:376417296-376417319
GAATTTATATAAAGTTAACATGTATTACCT376417296GTCCTTCACTAACAACTGGCCCAAGCCTGCAACCCTCCTCGAGCGGGTCTGACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gtccttcactaacaactggcccaa
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gtccttcactaacaactggcccaa | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.496 | 2.487 | search_plus_done; http://172.18.8.135:50400/match?q=GTCCTTCACTAACAACTGGCCCAA&k=0&no_gap=0&offset=0&limit=50
2.560 | 0.064 | search_minus_done; http://172.18.8.135:50400/match?q=TTGGGCCAGTTGTTAGTGAAGGAC&k=0&no_gap=0&offset=0&limit=0
2.560 | 0.000 | cgi_end;

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