GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-01-08 19:22:36, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pyrus x bretschneideri Unigene60396_XinShao mRNA sequence.
JR648592.1:128-147
AAAGCTTAGGTTTTTCAACCGCATCCGACG128GTTCCTACGCTCCAAAAACGCCCGCAAACGCCCTACGCCGTCGGATCACT
Malus domestica cultivar Red Fuji chromosome 10.
CP147802.1:5438970-5438989
AAAGCTTAGGTTTATCAACCGTATCCGACG5438970GTTCCTACGCTCCAAAAACGCCCGCAAGCGCCCTACGCCGTCAGATCACT
Malus domestica cultivar Red Fuji chromosome 10.
CP147811.1:4426366-4426385
AAAGCTTAGGTTTATCAACCGTATCCGACG4426366GTTCCTACGCTCCAAAAACGCCCGCAAGCGCCCTACGCCGTCAGATCACT
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:38435955-38435974
AGTGATCTGACGGCGTAGGGCGCTTGCGGG38435955CGTTTTTGGAGCGTAGGAACCGTCGGATACGGTTGATAAACCTAAGCTTT
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:39413567-39413586
AGTGATCTGACGGCGTAGGGCGCTTGCGGG39413567CGTTTTTGGAGCGTAGGAACCGTCGGATACGGTTGATAAACCTAAGCTTT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:36889876-36889895
AGTGATCTGACGGCGTAGGGCGCTTGCGGG36889876CGTTTTTGGAGCGTAGGAACCGTCGGATACGGTTGATAAACCTAAGCTTT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:37363509-37363528
AGTGATCTGACGGCGTAGGGCGCTTGCGGG37363509CGTTTTTGGAGCGTAGGAACCGTCGGATGCGGTTGATAAACCTAAGCTTT
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:39735758-39735777
AGTGATCTGACGGCGTAGGGCGCTTGCGGG39735758CGTTTTTGGAGCGTAGGAACCGTCGGATACGGTTGATAAACCTAAGCTTT
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:35769592-35769611
AGTGATCCGACGGCGTAGGGCGCTTGCGGG35769592CGTTTTTGGAGCGTAGGAACCGTCGGATGCGGTTGATAAACCTAAGCTTT
Malus ioensis cultivar PI590015 chromosome 10.
CP154733.1:36188139-36188158
AGTGATCCGACGGCGTAGGGCTCTTGCGGG36188139CGTTTTTGGAGCGTAGGAACCGTCGGATGCGGTTGAAAAACCTAAGCTTT
Malus ioensis cultivar PI590015 chromosome 10.
CP154750.1:40050709-40050728
AGTGATCCGACGGCGTAGGGCTCTTGCGGG40050709CGTTTTTGGAGCGTAGGAACCGTCGGATGCGGTTGAAAAACCTAAGCTTT
Malus coronaria cultivar PI590014 chromosome 10.
CP154767.1:40791304-40791323
AGTGATCCGACGGCGTAGGGCTCTTGCGGG40791304CGTTTTTGGAGCGTAGGAACCGTCGGATGCGGTTGAAAAACCTAAGCTTT
Malus coronaria cultivar PI590014 chromosome 10.
CP154784.1:40773113-40773132
AGTGATCCGACGGCGTAGGGCTCTTGCGGG40773113CGTTTTTGGAGCGTAGGAACCGTCGGATGCGGTTGAAAAACCTAAGCTTT
Malus domestica cultivar WA 38 chromosome 10B.
CP165693.1:39737318-39737337
AGTGATCTGACGGCGTAGGGCGCTTGCGGG39737318CGTTTTTGGAGCGTAGGAACCGTCGGATACGGTTGATAAACCTAAGCTTT
Malus domestica cultivar WA 38 chromosome 10A.
CP165710.1:37946384-37946403
AGTGATCTGACGGCGTAGGGCGCTTGCGGG37946384CGTTTTTGGAGCGTAGGAACCGTCGGATACGGTTGATAAACCTAAGCTTT
Malus domestica cultivar Golden Delicious chromosome 10.
CP168774.1:38586357-38586376
AGTGATCTGACGGCGTAGGGCGCTTGCGGG38586357CGTTTTTGGAGCGTAGGAACCGTCGGATACGGTTGATAAACCTAAGCTTT
Malus domestica cultivar Golden Delicious chromosome 10.
CP168791.1:38962857-38962876
AGTGATCTGACGGCGTAGGGCGCTTGCGGG38962857CGTTTTTGGAGCGTAGGAACCGTCGGATACGGTTGATAAACCTAAGCTTT
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:38442201-38442220
AGTGATCTGACGGCGTAGGGCGCTTGCGGG38442201CGTTTTTGGAGCGTAGGAACCGTCGGATACGGTTGATAAACCTAAGCTTT
Malus domestica genome assembly, chromosome: 10.
OU696686.1:38965556-38965575
AGTGATCTGACGGCGTAGGGCGCTTGCGGG38965556CGTTTTTGGAGCGTAGGAACCGTCGGATACGGTTGATAAACCTAAGCTTT
Malus domestica genome assembly, chromosome: 10.
OU744551.1:38671950-38671969
AGTGATCTGACGGCGTAGGGCGCTTGCGGG38671950CGTTTTTGGAGCGTAGGAACCGTCGGATACGGTTGATAAACCTAAGCTTT
Malus domestica genome assembly, chromosome: 10.
OU744962.1:39839332-39839351
AGTGATCTGACGGCGTAGGGCGCTTGCGGG39839332CGTTTTTGGAGCGTAGGAACCGTCGGATACGGTTGATAAACCTAAGCTTT
Malus domestica genome assembly, chromosome: 10.
OU745000.1:38465626-38465645
AGTGATCTGACGGCGTAGGGCGCTTGCGGG38465626CGTTTTTGGAGCGTAGGAACCGTCGGATACGGTTGATAAACCTAAGCTTT
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:37155002-37155021
AGTGATCTGACGGCGTAGGGCGCTTGCGGG37155002CGTTTTTGGAGCGTAGGAACCGTCGGATACGGTTGATAAACCTAAGCTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/gttcctacgctccaaaaacg
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : gttcctacgctccaaaaacg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.194 | 0.185 | search_plus_done; http://172.18.8.135:50800/match?q=GTTCCTACGCTCCAAAAACG&k=0&no_gap=0&offset=0&limit=50
0.294 | 0.100 | search_minus_done; http://172.18.8.135:50800/match?q=CGTTTTTGGAGCGTAGGAAC&k=0&no_gap=0&offset=0&limit=47
0.307 | 0.013 | cgi_end;

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