GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 00:05:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ipomoea nil cDNA clone:jm1h17, 3' end, single read.
BJ568143.1:60-83
GGTGTCTGTCATCCTTTTAATAATTTAATC60TATAGGATGATGCAAGGCAGAGCAAGACAGAAAAGGAAGAAGAAAAAATCACAA
Ipomoea nil cDNA clone:jm17e18, 3' end, single read.
BJ571321.1:52-75
GGTGTCTGTCATCCTTTTAATAATTTAATC52TATAGGATGATGCAAGGCAGAGCAAGACAGAAAAGGAAGAAGAAAAAATCACAA
Ipomoea nil cDNA clone:jm23k16, 3' end, single read.
BJ573378.1:48-71
GGTGTCTGTCATCCTTTTAATAATTTAATC48TATAGGATGATGCAAGGCAGAGCAAGACAGAAAAGGAAGAAGAAAAAATCACAA
Ipomoea nil cDNA clone:jmsf1i04, 3' end.
CJ759211.1:52-75
GGTGTCTGTCATCCTTTTAATAATTTAATC52TATAGGATGATGCAAGGCAGAGCAAGACAGAAAAGGAAGAAGAAAAAATCACAA
Ipomoea nil cDNA clone:jmsf8g18, 3' end.
CJ769205.1:39-62
GGTGTCTGTCATCCTTTTAATAATTTAATC39TATAGGATGATGCAAGGCAGAGCAAGACAGAAAAGGAAGAAGAAAAAATCACAA
Ipomoea nil mRNA, clone: jm45e08, 3' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY920429.1:115-138
GGTGTCTGTCATCCTTTTAATAATTTAATC115TATAGGATGATGCAAGGCAGAGCAAGACAGAAAAGGAAGAAGAAAAAATCACAA
Ipomoea nil DNA, BAC clone: JMHiBa-028O15, sequence: JMHiBa-028O15.b.
GA939461.1:190-213
GGTGTCTGTCATCCTTTTAATAATTTAATC190TATAGGATGATGCAAGGCAGAGCAAGACAGAAAAGGAAGAAGAAAAAATCACAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/tataggatgatgcaaggcagagca
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : tataggatgatgcaaggcagagca | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.379 | 0.370 | search_plus_done; http://172.18.8.135:50400/match?q=TATAGGATGATGCAAGGCAGAGCA&k=0&no_gap=0&offset=0&limit=50
0.411 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTCTGCCTTGCATCATCCTATA&k=0&no_gap=0&offset=0&limit=43
0.411 | 0.000 | cgi_end;

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