GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 04:35:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS21002D05 KS21 Capsicum annuum cDNA, mRNA sequence.
GD099362.1:418-441
AACTAAAGCTTTTTCTTGAACAGCAGACCA418TATGTCTGAATCTGAACTCGAGGAGACCCCGTTTGCTGCAGGCGCATCCTCAGT
KS23009B12 KS23 Capsicum annuum cDNA, mRNA sequence.
GD111788.1:465-488
AACTAAAGCTTTTTCTTGAACAGCAGACCA465TATGTCTGAATCTGAACTCGAGGAGACCCCGTTTGCTGCAGGCGCATCCTCAGT
Capsicum annuum Takanotsume DNA, chromosome 8, sequence.
AP026703.1:144176060-144176083
AACTAAAGCTTTTTCTTGAACAGCAGACCA144176060TATGTCTGAATCTGAACTCGAGGAGACCCCGTTTGCTGCAGACGCATCCTCAGT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 1.
CP124719.1:131244225-131244248
AACTAAAGCTTTTTCTTGAACAGCAGACCA131244225TATGTCTGAATCTGAACTCGAGGAAACCCCGTTTGCTGCAGGTGCATCCTCAGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 8.
CP124724.1:157007293-157007316
AACTAAAGCTTTTTCTTGAACAGCAGACCA157007293TATGTCTGAATCTGAACTCGAGGAGACCCCGTTTGCTGCAGGCGCATCCTCAGT
KS21029A16 KS21 Capsicum annuum cDNA, mRNA sequence.
GD101827.1:318-341
ACTGAGGATGCGCCTGCAGCAAACGGGGTC318TCCTCGAGTTCAGATTCAGACATATGGTCTGCTGTTCAAGAAAAAGCTTTAGTT
KS25003A16 KS25 Capsicum annuum cDNA, mRNA sequence.
GD124080.1:189-212
ACTGAGGATGCGCCTGCAGCAAACGGGGTC189TCCTCGAGTTCAGATTCAGACATATGGTCTGCTGTTCAAGAAAAAGCTTTAGTT
TSA: Capsicum annuum MGMT_Contig44113 mRNA sequence.
JW094357.1:1967-1990
ACTGAGGATGCGCCTGCAGCAAACGGGGTC1967TCCTCGAGTTCAGATTCAGACATATGGTCTGCTGTTCAAGAAAAAGCTTTAGTT
TSA: Capsicum annuum CM_MegaContig_27655 mRNA sequence.
JW104768.1:2037-2060
ACTGAGGATGCGCCTGCAGCAAACGGGGTC2037TCCTCGAGTTCAGATTCAGACATATGGTCTGCTGTTCAAGAAAAAGCTTTAGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/tatgtctgaatctgaactcgagga
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : tatgtctgaatctgaactcgagga | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.274 | 0.265 | search_plus_done; http://172.18.8.135:50400/match?q=TATGTCTGAATCTGAACTCGAGGA&k=0&no_gap=0&offset=0&limit=50
0.469 | 0.195 | search_minus_done; http://172.18.8.135:50400/match?q=TCCTCGAGTTCAGATTCAGACATA&k=0&no_gap=0&offset=0&limit=45
0.472 | 0.003 | cgi_end;

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