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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-12 22:59:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 13 from patent US 11286494.
MY949296.1:2026-2043
TTCTCCGGGATGATGCAGACAGGAAGAAAG2026TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGTTG
Brassica oleracea var. italica EST, clone AAFC_WHRI_Zennia003B01_M13orT7orSP6_ForR.
AM394051.1:87-104
TTCTCGGGGATGATGAAGACAGGGAGAAAG87TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAGCATATGCCTTTG
09F15 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA 3', mRNA sequence.
CD531077.1:309-326
TTCTCTGGGATGATGCAGACAGGAAGAAAG309TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGTTG
11A03 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA 3', mRNA sequence.
CD531493.1:309-326
TTCTCTGGGATGATGCAGACAGGAAGAAAG309TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGTTG
35A12 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA 3', mRNA sequence.
CD534009.1:310-327
TTCTCTGGGATGATGCAGACAGGAAGAAAG310TCGTTGCAGAGGTTTAGCCGCCTNGTGGCGTCTCAACATATGCCGTTG
0109304 Brassica napus Damaged cotyledons Brassica napus cDNA, mRNA sequence.
EV227378.1:318-335
TTCTCAGGGATGATGAAGACAGGGAGGAAG318TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAGCATATGCCTTTG
RR4DN69TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY923160.1:452-469
TTCTCGGGGATGATGCAGACAGGGAGAAAG452TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAGCATATGCCTTTG
RR4F880TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD558490.1:315-332
TTCTCGGGGATGATGCAGACAGGGAGAAAG315TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAGCATATGCCTTTG
Raphanus sativus mRNA, clone: RSCF01C15, 5' end sequence.
FY428093.1:725-742
TTCTCGGGGATGATGCAGACAGGGAGAAAG725TCGTTGCAGAGGTTTAGCCGCCTTGTTGCGTCTCAGCATATGCCTTTG
Raphanus sativus mRNA, clone: RSCF12J17, 5' end sequence.
FY431021.1:725-742
TTCTCGGGGATGATGCAGACAGGGAGAAAG725TCGTTGCAGAGGTTTAGCCGCCTTGTTGCGTCTCAGCATATGCCTTTG
Raphanus sativus mRNA, clone: RSCF14N04, 5' end sequence.
FY431570.1:725-742
TTCTCGGGGATGATGCAGACAGGGAGAAAG725TCGTTGCAGAGGTTTAGCCGCCTTGTTGCGTCTCAGCATATGCCTTTG
c10_12na_1j.s 12na Brassica napus cDNA clone c10_12na_1j 5, mRNA sequence.
GT081304.1:365-382
TTCTCGGGGATGATGAAGACAGGGAGAAAG365TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAGCATATGCCTTTG
xnzbca0_0013_B06 Phytophthora parastica infected Arabidopsis leaf Arabidopsis thaliana cDNA clone xnzbca0_0013_B06, mRNA sequence.
HO207375.1:582-599
TTCTCCGGGATGATGCAGACAGGAAGAAAG582TCGTTGCAGAGGTTTAGCCG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8323.
FX730090.1:2252-2269
TTCTCAGGGATGATGAAGACAGGGAGGAAG2252TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAGCATATGCCTTTG
BOT01-104H17TF BOT01 Brassica oleracea genomic clone BOT01-104H17, genomic survey sequence.
FI753042.1:651-668
TTCTCGGGGATGATGAAGACAGGGAGAAAG651TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAGCATATGCCTTTG
Arabidopsis thaliana T-DNA flanking sequence GK-757A11-107936-13ci.
LN510539.1:141-158
TTCTCCGGGATGATGCAGACAGGAAGAAAG141TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGTTG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092L06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189527.2:41303-41320
TTCTCAGGGATGATGAAGACAGGGAGGAAG41303TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAGCATATGCCTTTG
Arabidopsis thaliana chromosome I BAC T14P4 genomic sequence, complete sequence.
AC022521.4:45535-45552
TTCTCCGGGATGATGCAGACAGGAAGAAAG45535TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGTTG
Arabidopsis thaliana AT1G02660 mRNA, partial cds, clone: RAFL22-01-J10.
AK317736.1:1539-1556
TTCTCCGGGATGATGCAGACAGGAAGAAAG1539TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGTTG
Arabidopsis thaliana At1g02660/T14P4_9 mRNA, complete cds.
AY048246.1:2261-2278
TTCTCCGGGATGATGCAGACAGGAAGAAAG2261TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGTTG
Arabidopsis thaliana At1g02660/T14P4_9 mRNA, complete cds.
AY139797.1:2026-2043
TTCTCCGGGATGATGCAGACAGGAAGAAAG2026TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGTTG
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69097945-69097962
TTCTCGGGGATGATGAAGACAGGGAGGAAG69097945TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAGCATATGCCTTTG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:53033636-53033653
TTCTCAGGGATGATGAAGACAGGGAGGAAG53033636TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAGCATATGCCTTTG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41183908-41183925
TTCTCGGGGATGATGAAGACAGGGAGAAAG41183908TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAGCATATGCCTTTG
Brassica rapa genome, scaffold: A09.
LR031568.1:57182119-57182136
TTCTCGGGGATGATGAAGACAGGGAGGAAG57182119TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAGCATATGCCTTTG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50439717-50439734
TTCTCGGGGATGATGAAGACAGGGAGAAAG50439717TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAGCATATGCCTTTG
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:19008266-19008283
TTCTCGGGGATGATGAAGACAGGGAGAAAG19008266TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAGCATATGCCTTTG
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:67706129-67706146
TTCTCGGGGATGATGAAGACAGGGAGGAAG67706129TCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAGCATATGCCTTTG
Draba incana genome assembly, chromosome: 7.
OY755208.1:36086965-36086982
TTCTCTGGGATGATGAAGACAGGAAGAAAG36086965TCGTTGCAGAGGTTTAGCCGCCTTGTTGCGTCTCAACACATGCCTTTG
Cordylochernes scorpioides isolate IN4F17 chromosome 01.
CP092863.1:213134121-213134138
TGTATGGCGCTCCAAGCAGTAGCTGAAACT213134121TCGTTGCAGAGGTTTAGCCAACATTTCCTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 02.
CP092864.1:112768586-112768603
TGTATGGCGCTCCAAGCAGTAGCTGAAACT112768586TCGTTGCAGAGGTTTAGCCAACATTACCTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 02.
CP092864.1:128715803-128715820
TGTATGGCGCTCCATGCAGTAGCTGAAACT128715803TCGTTGCAGAGGTTTAGCCAAGATTTAAGTTTGACTTTCCGTATTGAT
Cordylochernes scorpioides isolate IN4F17 chromosome 03.
CP092865.1:107104397-107104414
TGTATGGCGCTCCAAGCAGTGGCTGAAACT107104397TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTCGTATCGCTG
Cordylochernes scorpioides isolate IN4F17 chromosome 03.
CP092865.1:159144587-159144604
TGTATGGCGCTCCAAGCAGTGGCTGAAACT159144587TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 04.
CP092866.1:40588018-40588035
TGTATGGCGCTCCAAGCAGTGGCTGAAACT40588018TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 04.
CP092866.1:40636111-40636128
TGTATGGCGCTCCAAGCAGTGGCTGAAACT40636111TCGTTGCAGAGGTTTAGCCAACATTTACTCCTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 04.
CP092866.1:40691292-40691309
TGTATGGCGCTCCAAGCAGTGGCTGAAACT40691292TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 04.
CP092866.1:40804491-40804508
TGTATGGCGCTCCAAGCAGTGGCTGAAACT40804491TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 04.
CP092866.1:97468432-97468449
TGTATCGCGCTCCAAGCAGTGGCTGAAACT97468432TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCATATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 04.
CP092866.1:97558141-97558158
TGTATGGCGCTCCAAGCAGTGGCTGAAACT97558141TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCATATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 05.
CP092867.1:1645850-1645867
TGTATGGCGCTCCAAGCAGTAGCTGAAACT1645850TCGTTGCAGAGGTTTAGCCAACATTTCCTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 05.
CP092867.1:11906101-11906118
TGTATGGCGCTCCAAGCAGTGGCTGAAACT11906101TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 06.
CP092868.1:70207275-70207292
TGTATGGCGCTCCAAGCAGTAGCTGAAACT70207275TCGTTGCAGAGGTTTAGCCAACATTTCCTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 06.
CP092868.1:79874336-79874353
TGTATGGCGCTCCAAGAAGTGGCTGAAACT79874336TCGTTGCAGAGGTTTAGCCAACATTTACCCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 07.
CP092869.1:21623589-21623606
TGTATGGCGCTCCAAGCAGTAGCTGAAACT21623589TCGTTGCAGAGGTTTAGCCAACATTTCCTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 07.
CP092869.1:75263823-75263840
TGTATGGCGCTCCAAGCAGTAGCTGAAACT75263823TCGTTGCAGAGGTTTAGCCAACATTTCCTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 07.
CP092869.1:75987598-75987615
TGTATGGCGCTCAATGCAGTGGCTGAAACT75987598TCGTTGCAGAGGTTTAGCCAACATTTACGCTTGGCTTTTCTACATTGC
Cordylochernes scorpioides isolate IN4F17 chromosome 07.
CP092869.1:76053858-76053875
TGTATGGCGCTCAATGCAGTGGCTGAAACT76053858TCGTTGCAGAGGTTTAGCCAACATTTACGCTTGGCTTTTCTACATTGC
Cordylochernes scorpioides isolate IN4F17 chromosome 07.
CP092869.1:82232163-82232180
TGTATGGCGCTCCATGCAGTGGCTGAAACT82232163TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 08.
CP092870.1:48485224-48485241
TGTATGGCGCTCCAAGCAGTGGCTGAAACT48485224TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 09.
CP092871.1:47532041-47532058
TGTATGGCGCTCCAAGCAGTAGCTGAAACT47532041TCGTTGCAGAGGTTTAGCCAACATTTCCTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 10.
CP092872.1:34765790-34765807
TGTATGGCGCTCCAAGCAGTAGATGAAACT34765790TCGTTGCAGAGGTTTAGCCAACATTTCCTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 10.
CP092872.1:68360118-68360135
TGTATGGCGCTCCAAGCAGTAGCTGAAACT68360118TCGTTGCAGAGGTTTAGCCAACATTTCTTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 10.
CP092872.1:68497651-68497668
TGTATGGCGCTCCAAGCAGTAGCTGAAACT68497651TCGTTGCAGAGGTTTAGCCAACATTTCTTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 10.
CP092872.1:80966131-80966148
TGTATGGCGCTCCAAGCAGTGGCTGAAACT80966131TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCGTACCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 13.
CP092875.1:31422884-31422901
TGTATGGCGCTCCAAGCAGTGGCTGAAACT31422884TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCGTGTCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 13.
CP092875.1:31455849-31455866
TGTATGGCGCTCCAAGCAGTGGCTGAAACT31455849TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCGTGTCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 13.
CP092875.1:34786236-34786253
TGTATGGCGCTCCAAGCAGTAGCTGAAACT34786236TCGTTGCAGAGGTTTAGCCAACATTTCCTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 14.
CP092876.1:49071760-49071777
TGTATGGCGCTCCAAGCAGTGGCTGAAACT49071760TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGTTTTTCGTATCGCC
Cordylochernes scorpioides isolate IN4F17 chromosome 14.
CP092876.1:51555182-51555199
TGTATGGCGCTCCAAGCAGTGGCTGAAACT51555182TCGTTGCAGAGGTTTAGCCTACATTTACTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 14.
CP092876.1:60743658-60743675
TGTATGGCGCTCCAAGCAGTGGCTGAAACT60743658TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 15.
CP092877.1:84505914-84505931
TGTATGGCGCTCCAAGCAGTAGCTGAAACT84505914TCGTTGCAGAGGTTTAGCCAACATTTCCTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 19.
CP092881.1:43770676-43770693
TGTATAGCGCTCCAAGCAATGGCTAAAACT43770676TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 22.
CP092884.1:28554547-28554564
TGTATGGCGCTCCAAGCAGTAGCTGAAACT28554547TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 22.
CP092884.1:52847892-52847909
TGTATGGCGCTCCAAGCAGTGGCTGAAACT52847892TCGTTGCAGAGGTTTAGCCAACATTTACTCTTGGCTTTTCGTATAGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 22.
CP092884.1:57363710-57363727
TGTATGGCGCTCCAAGCAGTAGCTGAAACT57363710TCGTTGCAGAGGTTTAGCCAACATTTCCTCTTGGCTTTTCGTATCGCT
Cordylochernes scorpioides isolate IN4F17 chromosome 23.
CP092885.1:37314084-37314101
TGTATGGCGCTCCAAGCAGTAGCTGAAACT37314084TCGTTGCAGAGGTTTAGCCAACATTTCCTCTTGGCTTTTCGTATCGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/tcgttgcagaggtttagc
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : tcgttgcagaggtttagc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.894 | 0.885 | search_plus_done; http://172.18.8.135:50400/match?q=TCGTTGCAGAGGTTTAGC&k=0&no_gap=0&offset=0&limit=50
0.955 | 0.061 | search_minus_done; http://172.18.8.135:50400/match?q=GCTAAACCTCTGCAACGA&k=0&no_gap=0&offset=0&limit=0
0.955 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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