GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 21:31:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 4.
CP141913.1:18597827-18597846
GAATATCACTCTCCAAAATCCTTAAGTTCT18597827TTATAGCAGCAACAGGAGCGTGGCCTATTTTCCTGAGGGTAAAGAGAAGG
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141930.1:19456409-19456428
GAAGATCACTCTCCAAAATCCTTTAGTTCC19456409TTATAGCAGCAACAGGAGCGTGGCCTATTTTCCTGAGGGTAAAGAGAAGG
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141956.1:18901355-18901374
GAATATCACTCTCCAAAATCCTTAAGTTCT18901355TTATAGCAGCAACAGGAGCGTGGCCTATTTTCCTGAGGGTAAAGAGAAGG
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141973.1:18283018-18283037
GAAGATCACTCTCCAAAATCCTTTAGTTCT18283018TTATAGCAGCAACAGGAGCGTGGCCTATTTTCCTGAGGGTAAAGAGAAGG
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143361.1:19109441-19109460
GAAGATCACTCTCCAAAATCCTTTAGTTCC19109441TTATAGCAGCAACAGGAGCGTGGCCTATTTTCCTGAGGGTAAAGAGAAGG
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143378.1:18147812-18147831
GAAGATCACTCTCCAAAATCCTTTAGTTCC18147812TTATAGCAGCAACAGGAGCGTGGCCTATTTTCCTGAGGGTAAAGAGAAGG
Malus sylvestris genome assembly, chromosome: 4.
OU696506.1:19202118-19202137
GAAGATCACTCTCCAAAATCCTTTAGTTCC19202118TTATAGCAGCAACAGGAGCGTGGCCTATTTTCCTGAGGGTAAAGAGAAGG
Malus domestica genome assembly, chromosome: 4.
OU696680.1:19294796-19294815
AAAGATCACTCTCCAAAATCCTTTAGTTCC19294796TTATAGCAGCAACAGGAGCGTGGCCTATTTTCCTGAGGGTAAAGAGAAGG
Malus domestica genome assembly, chromosome: 4.
OU744545.1:19292315-19292334
GAAGATCACTCTCCAAAATCCTTTAGTTCC19292315TTATAGCAGCAACAGGAGCGTGGCCTATTTTCCTGAGGGTAAAGAGAAGG
Malus domestica genome assembly, chromosome: 4.
OU744956.1:19487964-19487983
GAAGATCACTCTCCAAAATCCTTTAGTTCC19487964TTATAGCAGCAACAGGAGCGTGGCCTATTTTCCTGAGGGTAAAGAGAAGG
Malus domestica genome assembly, chromosome: 4.
OU744994.1:19436462-19436481
GAAGATCACTCTCCAAAATCCTTTAGTTCC19436462TTATAGCAGCAACAGGAGCGTGGCCTATTTTCCTGAGGGTAAAGAGAAGG
Malus x robusta genome assembly, chromosome: 17.
OY720341.1:11569559-11569578
CCTTCTCTTTACCCTCAGGAAAATAGGCCA11569559CGCTCCTGTTGCTGCTATAAGGAACTAAAGGATTTTGGAGAGTGATCTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ttatagcagcaacaggagcg
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ttatagcagcaacaggagcg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.104 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=TTATAGCAGCAACAGGAGCG&k=0&no_gap=0&offset=0&limit=50
0.127 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=CGCTCCTGTTGCTGCTATAA&k=0&no_gap=0&offset=0&limit=39
0.128 | 0.001 | cgi_end;

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