GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 10:52:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Chionographis japonica genome assembly, chromosome: 11.
OX393559.1:9491102-9491121
TGCATAATTTTATTCCAAGATGTATAGATG9491102TTGGTATGCCATCCATTTCATTTGAGGACGACGAACTGGTGGTAGAAGGA
Brachypalpus laphriformis genome assembly, chromosome: 1.
OX246753.1:240128233-240128252
CACTGTGGAATAGTTTTTTCTGAAACCAGC240128233TTGGTATGCCATCCATTTCAAGCCAATCTGTCAAATGTTCTAAGATGATT
Ostrea edulis genome assembly, chromosome: 5.
OX387708.1:42034892-42034911
CATACAGATTGAATTAAGACCTTCAAATAT42034892TTGGTATGCCATCCATTTCAGATATCAGCTAATTAATACATTTGGATTCG
Volucella zonaria genome assembly, chromosome: 1.
OZ014530.1:275459008-275459027
TTATTTTGATGGCTAGCTTAAGGACCTTAT275459008TTGGTATGCCATCCATTTCAGGTAATTTGTTATTGCTAAATCGTTTGCAT
Trifolium repens isolate ACLI19 chromosome 01_Pall.
CP125837.1:54449767-54449786
TTCCACATATATACAAAAGCACTTCCCCTT54449767TGAAATGGATGGCATACCAATGTCACACACTCCACAAGCACTGAAGGATG
Trifolium fragiferum genome assembly, chromosome: 7.
OX940795.1:46233757-46233776
TTCCTCATATATATAAAAGCACCCCCCCTT46233757TGAAATGGATGGCATACCAACGTCACACACTCCACAACCTCAAGCACTGA
Brachypalpus laphriformis genome assembly, chromosome: 1.
OX246753.1:26128157-26128176
ATGCAGACGATTCGGCGATAGTAAGTCACC26128157TGAAATGGATGGCATACCAAACAAGGCTCTCAAGCTAGCCATCGAAATAA
Brachypalpus laphriformis genome assembly, chromosome: 4.
OX246756.1:96468987-96469006
TCGCTGGGGGTTCGGCAATAATAAGTCACC96468987TGAAATGGATGGCATACCAAACAAAGCCCTTAAGTGGCGATTAAAACCAG
Nomophila noctuella genome assembly, chromosome: 4.
OY292485.1:5728993-5729012
TCCCACACAAGATATATTAGACAAAGCAAC5728993TGAAATGGATGGCATACCAAAAGAAGTGGTTTCTACATTACATGGTTCTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ttggtatgccatccatttca
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ttggtatgccatccatttca | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.094 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=TTGGTATGCCATCCATTTCA&k=0&no_gap=0&offset=0&limit=50
0.112 | 0.018 | search_minus_done; http://172.18.8.135:50400/match?q=TGAAATGGATGGCATACCAA&k=0&no_gap=0&offset=0&limit=46
0.115 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).