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2025-04-10 00:54:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

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TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_5513.
FX737260.1:1305-1324

GAGAAGAGCTAATGAAAGTGAAAGTTGGAG1305AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGCTCTTC

oei55c03.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ013373.1:91-110

GAGAAGAGCTAATGAAAGTGAAAGTTGGAG91AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGTTTCTT

BOT01-102N9TR BOT01 Brassica oleracea genomic clone BOT01-102N9, genomic survey sequence.
FI752797.1:341-360

GAGAAGAGCTAATGAAAGTGAAAGTTGGAG341AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGTTTCTT

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189262.2:8556-8575

GAGAAGAGCTAATGAAAGTGAAAGTTGGAG8556AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGCTCTTC

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 878 unordered pieces.
FJ789640.1:2958371-2958390

GAGAAGAGCTAATGAAAGTGAAAGTTGGAG2958371AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGCTCTTC

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB047M06, complete sequence.
AC189370.2:79902-79921

GAGAAGAGCTAATGAAAGTGAAAGTTGGAG79902AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGCTCTTC

Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:1129694-1129713

GAGAAGAGCTAATGAAAGTGAAAGTTGGAG1129694AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGCTCTTC

Brassica napus microsatellite cen56F207-1-10 sequence.
JX131118.1:2-21

T2AAGGTAACGGTGGCAGTGAGGGGCTCTTGTTCCATGTGAATTTGCTCTTC

Lipophrys pholis genome assembly, chromosome: 1.
OY726533.1:28889240-28889259

AAGGCAGTACAAGCCATCCACACTCATTGC28889240CTCACTGCCACCGTTACCTTCATCGCCTTCACCTGTGGAGCTGAATCCCA

Sequence 23179 from Patent WO2008034648.
FB803906.1:66-85

GAAGAGCAAATTCACATGGAACAAGAGCCC66CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Sequence 107863 from Patent WO2008034648.
FB888590.1:66-85

GAAGAGCAAATTCACATGGAACAAGAGCCC66CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Sequence 108470 from Patent WO2008034648.
FB889197.1:66-85

GAAGAGCAAATTCACATGGAACAAGAGCCC66CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Sequence 23179 from Patent EP2090662.
HB673965.1:66-85

GAAGAGCAAATTCACATGGAACAAGAGCCC66CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Sequence 107863 from Patent EP2090662.
HB758649.1:66-85

GAAGAGCAAATTCACATGGAACAAGAGCCC66CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Sequence 108470 from Patent EP2090662.
HB759256.1:66-85

GAAGAGCAAATTCACATGGAACAAGAGCCC66CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Sequence 185646 from Patent EP2090662.
HB836432.1:108-127

GAAGAGCAAATTCACATGGAACAAGAGCCC108CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Sequence 185648 from Patent EP2090662.
HB836434.1:67-86

GAAGAGCAAATTCACATGGAACAAGAGCCC67CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

BN15.001A04F011204 BN15 Brassica napus cDNA clone BN15001A04, mRNA sequence.
CD812921.1:108-127

GAAGAGCAAATTCACATGGAACAAGAGCCC108CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

BN15.020A11F020211 BN15 Brassica napus cDNA clone BN15020A11, mRNA sequence.
CD813546.1:84-103

AAGAAACAAATTCACATTGAACAAGAGCCC84CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC

78-E022826-021-016-L19-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022L1916Q, mRNA sequence.
CX189237.1:65-84

GAAGAGCAAATTCACATGGAACAAGAGCCC65CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Brassica rapa subsp. pekinensis mRNA, clone: BRest07-N08, 5'-end sequence.
DC845796.1:84-103

GAAGAGCAAATTCACATGGAACAAGAGCCC84CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Brassica oleracea var. viridis mRNA, clone: KALE-023L06, 5' end sequence.
DK464610.1:82-101

AAGAAACAAATTCACATTGAACAAGAGCCC82CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Brassica oleracea var. viridis mRNA, clone: KALE-024O05, 5' end sequence.
DK465064.1:44-63

AAGAAACAAATTCACATTGAACAAGAGCCC44CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Brassica oleracea var. viridis mRNA, clone: KALE-056C09, 5' end sequence.
DK477006.1:44-63

AAGAAACAAATTCACATTGAACAAGAGCCC44CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Brassica oleracea var. viridis mRNA, clone: KALE-063M24, 5' end sequence.
DK479943.1:44-63

AAGAAACAAATTCACATTGAACAAGAGCCC44CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Brassica oleracea var. viridis mRNA, clone: KALE-088A11, 5' end sequence.
DK489212.1:44-63

AAGAAACAAATTCACATTGAACAAGAGCCC44CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Brassica oleracea var. viridis mRNA, clone: KALE-113K05, 5' end sequence.
DK499011.1:44-63

AAGAAACAAATTCACATTGAACAAGAGCCC44CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

53COT5_T3_003_B02_28JUN2004_014 Brassica napus 36hr germinating seed library 53COT5 Brassica napus cDNA 5', mRNA sequence.
DY020229.1:73-92

AAGAAACAAATTCACATTGAACAAGAGCCC73CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC

BNBS8DCT_UP_006_A11_15APR2005_095 Brassica napus seeds BNBS8DCT Brassica napus cDNA 5', mRNA sequence.
EE458885.1:111-130

GAAGAGCAAATTCACATGGAACAAGAGCCC111CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

OL7317R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL7317, mRNA sequence.
EH425790.1:15-34

TGGAACAAGAGCCC15CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

EST5357 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B249A051, mRNA sequence.
EL627850.1:93-112

AAGAAACAAATTCACATTGAACAAGAGCCC93CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC

BNSCS2CT_UP_225_C06_28APR2007_044 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV032205.1:98-117

GAAGAGCAAATTCACATGGAACAAGAGCCC98CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

BNSCS3CT_UP_087_A07_05MAY2007_063 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV043369.1:96-115

GAAGAGCAAATTCACATGGAACAAGAGCCC96CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

BNSCS4CT_UP_114_B08_20MAY2007_062 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV067176.1:14-33

GGAACAAGAGCCC14CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

BR027207 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-105E06 5', mRNA sequence.
EX042563.1:35-54

GAAGAGCAAATTCACATGGAACAAGAGCCC35CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

BR066934 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-074D09 5', mRNA sequence.
EX082290.1:19-38

CACATGGAACAAGAGCCC19CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

BN18DYSC_UP_048_B10_20FEB2008_078 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG557078.1:113-132

GAAGAGCAAATTCACATGGAACAAGAGCCC113CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

BN18DYSC_UP_068_G05_28FEB2008_035 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG558907.1:43-62

AAGAAACAAATTCACATTGAACAAGAGCCC43CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC

BN18DYSC_UP_078_H08_28FEB2008_050 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG559802.1:43-62

AAGAAACAAATTCACATTGAACAAGAGCCC43CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC

BN18DYSC_UP_112_F03_7APR2008_021 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG562328.1:104-123

GAAGAGCAAATTCACATGGAACAAGAGCCC104CTCACTGCCACCGTTACCTTCTCCAACTTCCACTTTCATTAGCTCTTCTC

BN18DYSC_UP_132_E06_3APR2008_040 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG564085.1:84-103

AAGAAACAAATTCACATTGAACAAGAGCCC84CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC

BN24DYSC_UP_017_G07_1FEB2008_051 BN24DYSC Brassica napus cDNA 5', mRNA sequence.
FG572292.1:84-103

AAGAGACAAATTCACATTGAACAAGAGCCC84CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC

BN24DYSC_UP_061_E06_6FEB2008_040 BN24DYSC Brassica napus cDNA 5', mRNA sequence.
FG575950.1:43-62

AAGAAACAAATTCACATTGAACAAGAGCCC43CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC

Rattus norvegicus mRNA 5-prime sequence from clone TL0AAA81YP07 (TL0AAA81YP07FM1).
FQ084721.1:354-373

ACCTCATTTGCCTCCTTTAGTCTGGAAGAC354CTCACTGCCACCGTTACCTTTCCTTTATGGCCTTGTGACACAGTCTTCAT

MMN2_639 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to glucose-6-phosphate/phosphate translocator-related, mRNA sequence.
GR726023.1:105-124

GAAGAGCGAATTCACATGGAACAAGAGCCC105CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_14241.
FX708112.1:125-144

GAAGAGCAAATTCACATGGAACAAGAGCCC125CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Rattus norvegicus clone CH230-26F15, WORKING DRAFT SEQUENCE, 4 unordered pieces.
AC098223.6:222558-222577

ACCTCATTTGCCTCCTTTAGTCTGGAAGAC222558CTCACTGCCACCGTTACCTTTCCTTTATGGCCTTGTGACACAGTCTTCAT

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 74 unordered pieces.
FJ789637.1:12310-12329

GAAGAGCAAATTCACATGGAACAAGAGCCC12310CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:54755158-54755177

AAGAAACAAATTCACATTGAACAAGAGCCC54755158CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC

Brassica napus genome assembly, chromosome: A07.
HG994361.1:28261017-28261036

GAAGAGCAAATTCACATGGAACAAGAGCCC28261017CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Brassica napus genome assembly, chromosome: C06.
HG994370.1:48785560-48785579

AAGAAACAAATTCACATTGAACAAGAGCCC48785560CTCACTGCCACCGTTACCTTCTCCAACTTTCACCTTCATTAGCTCTTCTC

Brassica napus microsatellite H5F213-2 sequence.
JX131138.1:116-135

AAGAAACAAATTCACATTGAACAAGAGCCC116CTCACTGCCACCGTTACCTT

Brassica napus microsatellite H5F214-3 sequence.
JX131140.1:134-153

GAAGAGCAAATTCACATGGAACAAGAGCCC134CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Brassica napus microsatellite H5F214-3 sequence.
JX131140.1:191-210

TTTCACTTTCATTAGCTCTTCTCTATTTAG191CTCACTGCCACCGTTACCTT

Brassica napus microsatellite H5F214-4 sequence.
JX131141.1:134-153

GAAGAGCAAATTCACATGGAACAAGAGCCC134CTCACTGCCACCGTTACCTT

Brassica napus microsatellite H5F214-5 sequence.
JX131142.1:134-153

GAAGAGCAAATTCACATGGAACAAGAGCCC134CTCACTGCCACCGTTACCTT

Brassica napus microsatellite H5F215-3 sequence.
JX131143.1:132-151

GAAGAGCAAATTCACATGGAACAAGAGCCC132CTCACTGCCACCGTTACCTT

Brassica napus microsatellite H5F215-6 sequence.
JX131144.1:134-153

GAAGAGCAAATTCACATGGAACAAGAGCCC134CTCACTGCCACCGTTACCTT

Brassica napus microsatellite H5F215-9 sequence.
JX131145.1:96-115

AAGAAACAAATTCACATGGAACAAGAGCCC96CTCACTGCCACCGTTACCTT

Brassica napus microsatellite H5F217-1 sequence.
JX131146.1:96-115

AAGAAACAAATTCACATGGAACAAGAGCCC96CTCACTGCCACCGTTACCTT

Brassica napus microsatellite H6F218-8 sequence.
JX131149.1:96-115

AAGAAACAAATTCACATGGAACAAGAGCCC96CTCACTGCCACCGTTACCTTA

Brassica rapa genome, scaffold: A07.
LR031574.1:27248167-27248186

GAAGAGCAAATTCACATGGAACAAGAGCCC27248167CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:45045976-45045995

AAGAAACAAATTCACATTGAACAAGAGCCC45045976CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Brassica rapa genome assembly, chromosome: A07.
LS974623.2:27591123-27591142

GAAGAGCAAATTCACATGGAACAAGAGCCC27591123CTCACTGCCACCGTTACCTTCTCCAACTTTCACTTTCATTAGCTCTTCTC

Data Export:

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Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAGGTAACGGTGGCAGTGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGGTAACGGTGGCAGTGAG | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.149 | 0.140 | search_plus_done; http://172.18.8.135:50400/match?q=AAGGTAACGGTGGCAGTGAG&k=0&no_gap=0&offset=0&limit=50
1.837 | 1.688 | search_minus_done; http://172.18.8.135:50400/match?q=CTCACTGCCACCGTTACCTT&k=0&no_gap=0&offset=0&limit=42
1.874 | 0.037 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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