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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-20 16:07:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

UCRPT01_5_031_C06_T7 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_031_T7_C06, mRNA sequence.
CX546828.1:699-718
AGTAGACATCCACATGGACGAATTATAGTG699ACGAATTTCAAAGCCATTGCCAACATGAACGGTCTCAAAGCTTGGACACT
UCRCS10_9A08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9A08-A15-5.g, mRNA sequence.
CX674841.1:676-695
AGTAGACATCCACATGGACGAATTATAGCG676ACGAATTTCAAAGCCATTGCCAACATGAACGGTCTCAAAGCTTGGACACT
DPO039.C21_K09 Dpo03-Pupae-Whole-Untreated-Norm (DPO03) Dendroctonus ponderosae cDNA clone DPO039_K09 5', mRNA sequence.
GT344546.1:335-354
GCCAAAAGCAGACTTTCCACTTTATGCTCG335ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO039.CR_K09 Dpo03-Pupae-Whole-Untreated-Norm (DPO03) Dendroctonus ponderosae cDNA clone DPO039_K09 3', mRNA sequence.
GT344854.1:81-100
GCCAAAAGCAGACTTTCCACTTTATGCTCG81ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO045.C21_E23 Dpo04-Adult-Antenna-Untreated-Unnorm (DPO04) Dendroctonus ponderosae cDNA clone DPO045_E23 5', mRNA sequence.
GT348331.1:384-403
GCCAAAAGCAGACTTTCCACTTTATGCTCG384ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO045.C21_H07 Dpo04-Adult-Antenna-Untreated-Unnorm (DPO04) Dendroctonus ponderosae cDNA clone DPO045_H07 5', mRNA sequence.
GT348384.1:381-400
GCCAAAAGCAGACTTTCCACTTTATGCTCG381ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO045.CR_E23 Dpo04-Adult-Antenna-Untreated-Unnorm (DPO04) Dendroctonus ponderosae cDNA clone DPO045_E23 3', mRNA sequence.
GT348677.1:72-91
GCCAAAAGCAGACTTTCCACTTTATGCTCG72ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO045.CR_H07 Dpo04-Adult-Antenna-Untreated-Unnorm (DPO04) Dendroctonus ponderosae cDNA clone DPO045_H07 3', mRNA sequence.
GT348724.1:134-153
GCCAAAAGCAGACTTTCCACTTTATGCTCG134ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO082.C21_B02 Dpo08-EAdult-Whole-Monoterp-Unnorm (DPO08) Dendroctonus ponderosae cDNA clone DPO082_B02 5', mRNA sequence.
GT377067.1:365-384
GCCAAAAGCAGACTTTCCACTTTATGCTCG365ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO082.CR_B02 Dpo08-EAdult-Whole-Monoterp-Unnorm (DPO08) Dendroctonus ponderosae cDNA clone DPO082_B02 3', mRNA sequence.
GT377407.1:110-129
GCCAAAAGCAGACTTTCCACTTTATGCTCG110ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO0814.C21_G19 Dpo08-EAdult-Whole-Monoterp-Unnorm (DPO08) Dendroctonus ponderosae cDNA clone DPO0814_G19 5', mRNA sequence.
GT384960.1:353-372
GCCAAAAGCAGACTTTCCACTTTATGCTCG353ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO0814.CR_G19 Dpo08-EAdult-Whole-Monoterp-Unnorm (DPO08) Dendroctonus ponderosae cDNA clone DPO0814_G19 3', mRNA sequence.
GT385283.1:91-110
GCCAAAAGCAGACTTTCCACTTTATGCTCG91ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1023.C21_G17 Dpo10-EAdult-MGFB-JH-Norm (DPO10) Dendroctonus ponderosae cDNA clone DPO1023_G17 5', mRNA sequence.
GT412983.1:374-393
GCCAAAAGCAGACTTTCCACTTTATGCTCG374ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1023.CR_G17 Dpo10-EAdult-MGFB-JH-Norm (DPO10) Dendroctonus ponderosae cDNA clone DPO1023_G17 3', mRNA sequence.
GT413338.1:93-112
GCCAAAAGCAGACTTTCCACTTTATGCTCG93ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1114.C21_I20 Dpo11-EAdult-MGFB-Fed-Norm (DPO11) Dendroctonus ponderosae cDNA clone DPO1114_I20 5', mRNA sequence.
GT425721.1:381-400
GCCAAAAGCAGACTTTCCACTTTATGCTCG381ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1114.CR_I20 Dpo11-EAdult-MGFB-Fed-Norm (DPO11) Dendroctonus ponderosae cDNA clone DPO1114_I20 3', mRNA sequence.
GT426055.1:108-127
GCCAAAAGCAGACTTTCCACTTTATGCTCG108ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1116.C21_I10 Dpo11-EAdult-MGFB-Fed-Norm (DPO11) Dendroctonus ponderosae cDNA clone DPO1116_I10 5', mRNA sequence.
GT427104.1:372-391
GCCAAAAGCAGACTTTCCACTTTATGCTCG372ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO118.C21_P15 Dpo11-EAdult-MGFB-Fed-Norm (DPO11) Dendroctonus ponderosae cDNA clone DPO118_P15 5', mRNA sequence.
GT430417.1:381-400
GCCAAAAGCAGACTTTCCACTTTATGCTCG381ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1116.CR_I10 Dpo11-EAdult-MGFB-Fed-Norm (DPO11) Dendroctonus ponderosae cDNA clone DPO1116_I10 3', mRNA sequence.
GT431598.1:110-129
GCCAAAAGCAGACTTTCCACTTTATGCTCG110ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1123.C21_C23 Dpo11-EAdult-MGFB-Fed-Norm (DPO11) Dendroctonus ponderosae cDNA clone DPO1123_C23 5', mRNA sequence.
GT434627.1:381-400
GCCAAAAGCAGACTTTCCACTTTATGCTCG381ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1123.CR_C23 Dpo11-EAdult-MGFB-Fed-Norm (DPO11) Dendroctonus ponderosae cDNA clone DPO1123_C23 3', mRNA sequence.
GT434991.1:74-93
GCCAAAAGCAGACTTTCCACTTTATGCTCG74ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1131.C21_O24 Dpo11-EAdult-MGFB-Fed-Norm (DPO11) Dendroctonus ponderosae cDNA clone DPO1131_O24 5', mRNA sequence.
GT440500.1:371-390
GCCAAAAGCAGACTTTCCACTTTATGCTCG371ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1142.C21_F09 Dpo11-EAdult-MGFB-Fed-Norm (DPO11) Dendroctonus ponderosae cDNA clone DPO1142_F09 5', mRNA sequence.
GT448504.1:354-373
GCCAAAAGCAGACTTTCCACTTTATGCTCG354ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1142.CR_F09 Dpo11-EAdult-MGFB-Fed-Norm (DPO11) Dendroctonus ponderosae cDNA clone DPO1142_F09 3', mRNA sequence.
GT448834.1:103-122
GCCAAAAGCAGACTTTCCACTTTATGCTCG103ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1329.C21_N23 Dpo13-Adult-Head-Norm (DPO13) Dendroctonus ponderosae cDNA clone DPO1329_N23 5', mRNA sequence.
GT475339.1:385-404
GCCAAAAGCAGACTTTCCACTTTATGCTCG385ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1329.CR_N23 Dpo13-Adult-Head-Norm (DPO13) Dendroctonus ponderosae cDNA clone DPO1329_N23 3', mRNA sequence.
GT475687.1:40-59
GCCAAAAGCAGACTTTCCACTTTATGCTCG40ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO147.C21_A18 Dpo14-Larvae-Whole-Coldadapting-Norm (DPO14) Dendroctonus ponderosae cDNA clone DPO147_A18 5', mRNA sequence.
GT483887.1:381-400
GCCAAAAGCAGACTTTCCACTTTATGCTCG381ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO147.CR_A18 Dpo14-Larvae-Whole-Coldadapting-Norm (DPO14) Dendroctonus ponderosae cDNA clone DPO147_A18 3', mRNA sequence.
GT484199.1:84-103
GCCAAAAGCAGACTTTCCACTTTATGCTCG84ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1416.C21_M22 Dpo14-Larvae-Whole-Coldadapting-Norm (DPO14) Dendroctonus ponderosae cDNA clone DPO1416_M22 5', mRNA sequence.
GT487409.1:371-390
GCCAAAAGCAGACTTTCCACTTTATGCTCG371ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1416.CR_M22 Dpo14-Larvae-Whole-Coldadapting-Norm (DPO14) Dendroctonus ponderosae cDNA clone DPO1416_M22 3', mRNA sequence.
GT487753.1:106-125
GCCAAAAGCAGACTTTCCACTTTATGCTCG106ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1417.C21_B24 Dpo14-Larvae-Whole-Coldadapting-Norm (DPO14) Dendroctonus ponderosae cDNA clone DPO1417_B24 5', mRNA sequence.
GT487861.1:381-400
GCCAAAAGCAGACTTTCCACTTTATGCTCG381ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1417.CR_B24 Dpo14-Larvae-Whole-Coldadapting-Norm (DPO14) Dendroctonus ponderosae cDNA clone DPO1417_B24 3', mRNA sequence.
GT488221.1:36-55
GCCAAAAGCAGACTTTCCACTTTATGCTCG36ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1420.C21_L20 Dpo14-Larvae-Whole-Coldadapting-Norm (DPO14) Dendroctonus ponderosae cDNA clone DPO1420_L20 5', mRNA sequence.
GT490198.1:131-150
GCCAAAAGCAGACTTTCCACTTTATGCTCG131ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1420.CR_L20 Dpo14-Larvae-Whole-Coldadapting-Norm (DPO14) Dendroctonus ponderosae cDNA clone DPO1420_L20 3', mRNA sequence.
GT490538.1:74-93
GCCAAAAGCAGACTTTCCACTTTATGCTCG74ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1422.C21_E08 Dpo14-Larvae-Whole-Coldadapting-Norm (DPO14) Dendroctonus ponderosae cDNA clone DPO1422_E08 5', mRNA sequence.
GT491420.1:381-400
GCCAAAAGCAGACTTTCCACTTTATGCTCG381ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
DPO1422.CR_E08 Dpo14-Larvae-Whole-Coldadapting-Norm (DPO14) Dendroctonus ponderosae cDNA clone DPO1422_E08 3', mRNA sequence.
GT491768.1:53-72
GCCAAAAGCAGACTTTCCACTTTATGCTCG53ACGAATTTCAAAGCCATTGCTTTGGAGCTTCGCAGGCACGACGGCTATTT
Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:2906209-2906228
AGTAGACATCCACATGGACGAATTATAGCG2906209ACGAATTTCAAAGCCATTGCCAACATGAACGGTCTCAAAGCTTGGACACT
Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:2971170-2971189
AGTAGACATCCACATGGACGAATCATAGCG2971170ACGAATTTCAAAGCCATTGCCAACATGAACGGTCTCAAAGCTCGGACACT
Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:52626426-52626445
AGTAGACATCCACATGGACGAATTATAGTG52626426ACGAATTTCAAAGCCATTGCCAACATGAACGGTCTCAAAGCTTGGACACT
Tricholauxania praeusta genome assembly, chromosome: 4.
OX459031.1:95424771-95424790
TTTTGAAAAAAAATAAAAAAAATATTTATC95424771ACGAATTTCAAAGCCATTGCTTAATGCTTGCGAACTCTTGAAGTTCTGTT
Neria commutata genome assembly, chromosome: 2.
OY735246.1:18700900-18700919
TATTATATGTATTAAGTACTCAACTACTAC18700900ACGAATTTCAAAGCCATTGCTCTAAAAACTGGCCTATAAAGACACCAATA
Neria commutata genome assembly, chromosome: 2.
OY735246.1:49281747-49281766
TATTATATGTATTTGGTACTCAACTACTAC49281747ACGAATTTCAAAGCCATTGCTCTAAAAACTGGCCTATATACACCAGTTAA
Neria commutata genome assembly, chromosome: 3.
OY735247.1:32198144-32198163
TATTATATGTATTTGGTACTCAACTACTAC32198144ACGAATTTCAAAGCCATTGCTCTAAAAACTGGCCTATATACACCAGTTAA
Neria commutata genome assembly, chromosome: 3.
OY735247.1:34833902-34833921
TATTATATGTATTTGGTACTCAACTACTAC34833902ACGAATTTCAAAGCCATTGCTCTAAAAACTGGCCTATATACACCAGTTAA
Neria commutata genome assembly, chromosome: 4.
OY735248.1:7807154-7807173
TATATGTACTATTAGGTACTCAACTACTAC7807154ACGAATTTCAAAGCCATTGCTCTAAAAACTGGCCTATATATACCAGCTAA
Neria commutata genome assembly, chromosome: 5.
OY735249.1:18737873-18737892
AGATCTATGTATTAGGTACTCAACTACTAC18737873ACGAATTTCAAAGCCATTGCTCTAAAAACGGACCTATATATACCAGCTAA
GF-FV-P4C11 Marsh grapefruit young flavedo Citrus x paradisi cDNA, mRNA sequence.
BE208966.1:187-206
AGTGTCCAAGCTTTGAGACCGTTCATGTTG187GCAATGGCTTTGAAATTCGTCACTATAATTCGTCCATGTGGATGTCTACT
USDA-FP_00418 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00418 5', mRNA sequence.
BQ623327.1:153-172
AGTGTCCAAGCTTTGAGACCGTTCATGTTG153GCAATGGCTTTGAAATTCGTCACTATAATTCGTCCATGTGGATGTCTACT
USDA-FP_120000-637 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-29_A11 5', mRNA sequence.
CF505143.1:182-201
AGTGTCCAAGCTTTGAGACCGTTCATGTTG182GCAATGGCTTTGAAATTCGTCGCTATAATTCGTCCATGTGGATGTCTACT
USDA-FP_121000-439 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-38_B03 5', mRNA sequence.
CF505944.1:182-201
AGTGTCCAAGCTTTGAGACCGTTCATGTTG182GCAATGGCTTTGAAATTCGTCGCTATAATTCGTCCATGTGGATGTCTACT
Swietenia macrophylla isolate HCNGB_00002344 chromosome 15.
CP135565.1:10696711-10696730
AGTGTCCAAGCTTTGACACAATTCATGTGG10696711GCAATGGCTTTGAAATTCGTAGGTATAATTTATCTGTGTGGATGTCCACT
Cerastoderma edule genome assembly, chromosome: 6.
OX401409.1:36953255-36953274
GATAATTTCGTATGTTAAGCCGAACGCGTT36953255GCAATGGCTTTGAAATTCGTCGCATACTTGGATTTTTAACACACTTTGAA
Neria commutata genome assembly, chromosome: 1.
OY735245.1:42467205-42467224
TATTGGTGTCTTTATAGGCCAGTTTTTAGA42467205GCAATGGCTTTGAAATTCGTGTAGTAGTTGAGTACTTAATACATATAATA
Neria commutata genome assembly, chromosome: 2.
OY735246.1:34064016-34064035
TTAGCTGGTATATATAGGCCAGTTTTTAGA34064016GCAATGGCTTTGAAATTCGTGTAGTAGTTGAGTACCTAATAGTACATATA
Neria commutata genome assembly, chromosome: 4.
OY735248.1:18374799-18374818
TTAGCTGGTATATATAGGCCAGTTTTTAGA18374799GCAATGGCTTTGAAATTCGTGTAGTAGTTGAGTACCTAATAGTACATATA
Neria commutata genome assembly, chromosome: 4.
OY735248.1:29313367-29313386
TATTGGTGTCTTTATAGGCCAGTTTTTAGA29313367GCAATGGCTTTGAAATTCGTGTAGTAGTTGAGTACTTAATACATATAATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACGAATTTCAAAGCCATTGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACGAATTTCAAAGCCATTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.628 | 2.619 | search_plus_done; http://172.18.8.135:50400/match?q=ACGAATTTCAAAGCCATTGC&k=0&no_gap=0&offset=0&limit=50
2.760 | 0.132 | search_minus_done; http://172.18.8.135:50400/match?q=GCAATGGCTTTGAAATTCGT&k=0&no_gap=0&offset=0&limit=4
2.766 | 0.007 | cgi_end;

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