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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-19 15:48:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Solanum lycopersicum Micro-Tom DNA, chromosome 5, draft genome sequence.
AP028939.1:2915599-2915624
GTGTTTAGAACTCCAGCTTTTAAAACTCGT2915599ACTATTATGTCTATGAGGAAGTGGTCATAGTTCACCACATAAGTGAGCCAGCTTAG
Solanum lycopersicum cultivar I-3 chromosome 5.
CP023761.1:2644288-2644313
GTGTTTAGAACTCCAGCTTTTAAAACTCGT2644288ACTATTATGTCTATGAGGAAGTGGTCATAGTTCACCACATAAGTGAGCCAGCTTAG
Solanum pennellii chromosome ch05, complete genome.
HG975444.1:2879752-2879777
GTGTTTAGAACTCCAGCTTTTAAAACTTGT2879752ACTATTATGTCTATGAGGAAGTGGTCATAGTTCACCACATAAGTGAGCCAGCTTAG
Solanum lycopersicum chromosome ch05, complete genome.
HG975517.1:2644291-2644316
GTGTTTAGAACTCCAGCTTTTAAAACTCGT2644291ACTATTATGTCTATGAGGAAGTGGTCATAGTTCACCACATAAGTGAGCCAGCTTAG
Solanum lycopersicum genome assembly, chromosome: 5.
OU640348.1:3781030-3781055
GTGTTTAGAACTCCAGCTTTTAAAACTCGT3781030ACTATTATGTCTATGAGGAAGTGGTCATAGTTCACCACATAAGTGAGCCAGCTTAG
Solanum tuberosum GSS, clone GP21.
AJ487347.1:1363-1388
CTATGCTGGCTCACTAATGTGGTGAACTAT1363GACCACTTCCTCATAGACATAATAGTATGAGTTTTAAAAGCTGGAGGTAAAAACAC
Solanum verrucosum cultivar 11H23 chromosome 5.
CP133616.1:3556705-3556730
CTATGCTGGCTCACTAATGTGGTGAACTAT3556705GACCACTTCCTCATAGACATAATAGTATGAGTTTTAAAAGCTGGAGGTAAAAACAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACTATTATGTCTATGAGGAAGTGGTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTATTATGTCTATGAGGAAGTGGTC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.101 | 0.092 | search_plus_done; http://172.18.8.135:50400/match?q=ACTATTATGTCTATGAGGAAGTGGTC&k=0&no_gap=0&offset=0&limit=50
0.121 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=GACCACTTCCTCATAGACATAATAGT&k=0&no_gap=0&offset=0&limit=45
0.122 | 0.001 | cgi_end;

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