GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-15 02:31:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

EST6536 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B303C071, mRNA sequence.
EL629028.1:421-442
TCTACATTTCAGCCTGAGAAGATCTTACAA421ATGGCAACCAGCTTACCAGTCTTATTCAACACATTGAATGTGCGCAGAGCTA
RS2ER33TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD568498.1:27-48
GATTTCAGCCTGAGAAGATCTTACAA27ATGGCAACCAGCTTACCAGTCTTGTTCAACACATTGAATGTGCGCAGAGCTA
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:36574425-36574446
TCTACATTTCAGCCTGAGAAGATCTTACAA36574425ATGGCAACCAGCTTACCAGTCTTATTCAACACATTGAATGTGCGCAGAGCCA
Brassica napus genome assembly, chromosome: C02.
HG994366.1:58926051-58926072
TCTACATTTCAGCCTGAGAAGATCTTACAA58926051ATGGCAACCAGCTTACCAGTCTTATTCAACACATTGAATGTGCGCAGAGCTA
Brassica rapa genome, scaffold: A02.
LR031573.1:29157756-29157777
TCTACATTTCAGCCTGAGAAGATCTTACAA29157756ATGGCAACCAGCTTACCAGTCTTATTCAACACATTGAATGTGCGCAGAGCCA
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:60043490-60043511
TCTACATTTCAGCCTGAGAAGATCTTACAA60043490ATGGCAACCAGCTTACCAGTCTTATTCAACACATTGAATGTGCGCAGAGCTA
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:30089118-30089139
TCTACATTTCAGCCTGAGAAGATCTTACAA30089118ATGGCAACCAGCTTACCAGTCTTATTCAACACATTGAATGTGCGCAGAGCCA
0206648 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV140719.1:170-191
TAGCTCTGCGCACATTCAATGTGTTGAATA170AGACTGGTAAGCTGGTTGCCATTTGTAAGATCTTCTCAGGCTGAAATGTAGA
0206827 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV140898.1:171-192
TAGCTCTGCGCACATTCAATGTGTTGAATA171AGACTGGTAAGCTGGTTGCCATTTGTAAGATCTTCTCAGGCTGAAATGTAGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_1076.
FX667744.1:956-977
TAGCTCTCCGCACATTCAATGTGTTGAATA956AGACTGGTAAGCTGGTTGCCATTTGTAAGATCTTCTCAGGCTGAAATGTAGA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_2275.
FX692337.1:905-926
TGGCTCTGCGCACATTCAATGTGTTGAATA905AGACTGGTAAGCTGGTTGCCATTTGTAAGATCTTCTCAGGCTGAAATGTAGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_47652.
FX727385.1:865-886
TGGCTCTGCGCACATTCAATGTGTTGAATA865AGACTGGTAAGCTGGTTGCCATTTGTAAGATCTTCTCAGGCTGAAATGTAGA
TSA: Raphanus sativus RS18568 mRNA sequence.
JT803115.1:914-935
TAGCTCTCCGGACATTCAATGTGTTGAATA914AGACTGGTAAGCTGGTTGCCATTTGTAAGATCTTCTCAGGCTGAAATGTAGA
BOMLE16TF BO_2_3_KB Brassica oleracea genomic clone BOMLE16, genomic survey sequence.
BH646625.1:424-445
TAGCTCTGCGCACATTCAATGTGTTGAATA424AGACTGGTAAGCTGGTTGCCATTTGTAAGATCTTCTCAGGCTGAAATGTAGA
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:3543406-3543427
TAGCTCTGCGCACATTCAATGTGTTGAATA3543406AGACTGGTAAGCTGGTTGCCATTTGTAAGATCTTCTCAGGCTGAAATGTAGA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:12284740-12284761
TAGCTCTGCGCACATTCAATGTGTTGAACA12284740AGACTGGTAAGCTGGTTGCCATTTGTAAGATCTTCTCAGGCTGAAATGTAGA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:12284740-12284761
TAGCTCTGCGCACATTCAATGTGTTGAACA12284740AGACTGGTAAGCTGGTTGCCATTTGTAAGATCTTCTCAGGCTGAAATGTAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGGCAACCAGCTTACCAGTCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGGCAACCAGCTTACCAGTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.273 | 0.264 | search_plus_done; http://172.18.8.135:50400/match?q=ATGGCAACCAGCTTACCAGTCT&k=0&no_gap=0&offset=0&limit=50
0.458 | 0.185 | search_minus_done; http://172.18.8.135:50400/match?q=AGACTGGTAAGCTGGTTGCCAT&k=0&no_gap=0&offset=0&limit=43
0.465 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).