GGGenome | Results

Help | English

2025-04-10 00:54:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

44-E013414-021-002-B02q-SP6r ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022B022Q, mRNA sequence.
CX192332.1:218-237

TGTTTAATTAGACAGGAACTCTGTGTAGGA218CAACTGTCTCCACGGTGAGACCTGGTCCGAACCCAAACAGGACACCCCAC

EX20LIB6_UP_009_D06_19FEB2004_042 Brassica napus EX20LIB6 Brassica napus cDNA 5', mRNA sequence.
ES971253.1:172-191

TTTCTGTTTAGACAGGAACGCTGTGTAGGA172CAACTGTCTCCACGGTGAGACCTGG

EX20LIB6_UP_011_A08_19FEB2004_064 Brassica napus EX20LIB6 Brassica napus cDNA 5', mRNA sequence.
ES971300.1:172-191

TTTCTGTTTAGACAGGAACGCTGTGTAGGA172CAACTGTCTCCACGGTGAGACCTGG

EX20LIB6_UP_012_G01_17MAR2004_003 Brassica napus EX20LIB6 Brassica napus cDNA 5', mRNA sequence.
ES971348.1:167-186

TTTCTGTTTAGACAGGAACGCTGTGTAGGA167CAACTGTCTCCACGGTGAGACCTGG

EX20LIB6_UP_074_C12_20MAY2004_092 Brassica napus EX20LIB6 Brassica napus cDNA 5', mRNA sequence.
ES973095.1:170-189

TTTCTGTTTAGACAGGAACGCTGTGTAGGA170CAACTGTCTCCACGGTGAGACCTGG

EX20LIB6_UP_081_A11_01JUL2004_095 Brassica napus EX20LIB6 Brassica napus cDNA 5', mRNA sequence.
ES973279.1:173-192

TTTCTGTTTAAACAGGAACGCTGTGTAGGA173CAACTGTCTCCACGGTGAGACCTGG

EX20LIB6_UP_146_B07_31OCT2004_061 Brassica napus EX20LIB6 Brassica napus cDNA 5', mRNA sequence.
ES974966.1:172-191

TTTCTGTTTAGACAGGAACGCTGTGTAGGA172CAACTGTCTCCACGGTGAGACCTGG

0102154 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV201001.1:156-175

TGTTTAATTAAACAGGAACGCTGTGTAGGA156CAACTGTCTCCACGGTGAGACCTGGTCCGAACCCAAACAGGACACCCCAC

RR3AY05JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV545904.1:179-198

TTTCTGTTTAAACAGGAACGCTGTGTAGGA179CAACTGTCTCCACGGTGAGACCCGGTCCGAAACCAAACAAAACACCCCAC

Brassica rapa subsp. pekinensis mRNA, clone:BBRAF12F10, 3'-end sequence.
FY072358.1:148-167

TTTCTGTTTAGACAGGAACGCTGTGTAGGA148CAACTGTCTCCACGGTGAGACCTGGTCCGAACCCAAACAAGACACCCCAT

0232234 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO927595.1:130-149

TTTCTGTTTAGACAGGAACGCTGTGTAGGA130CAACTGTCTCCACGGTGAGACCTGGTCCGAACCCAAATAAGACACCCCAT

0271374 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO937380.1:225-244

TTTCTGTTTAGACAGGAACGCTGTGTAGGA225CAACTGTCTCCACGGTGAGACCTGGTCCGAACCCAAACAAGACACCCCAT

0231479 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO939968.1:305-324

TTTCTGTTTAAACAGGAACGCTGTGTAGGA305CAACTGTCTCCACGGTGAGACCTGGTCCGAACCCAAACAAGACACCCCAT

0231495 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO939972.1:305-324

TTTCTGTTTAAACAGGAACGCTGTGTAGGA305CAACTGTCTCCACGGTGAGACCTGGTCCGAACCCAAACAAGACACCCCAT

0231691 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO940021.1:305-324

TTTCTGTTTAAACAGGAACGCTGTGTAGGA305CAACTGTCTCCACGGTGAGACCTGGTCCGAACCCAAACAAGACACCCCAT

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_22044.
FX699688.1:89-108

TTTCTGTTTAGACAGGAACGCTGTGTAGGA89CAACTGTCTCCACGGTGAGACCTGGTCCGAACCCAAACAAGACACCCCAT

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_33990.
FX745976.1:142-161

TTTCTGTTTAGACAGGAACGCTGTGTAGGA142CAACTGTCTCCACGGTGAGACCTGGTCCGAACCCAAACAAGACACCCCAT

TSA: Raphanus sativus RS24372 mRNA sequence.
JT808919.1:142-161

TTTCTGTTTAAACAGGAACGCTGTGTAGGA142CAACTGTCTCCACGGTGAGACCCGGTCCGAAACCAAACAAGACACCCCAC

TSA: Cunninghamia lanceolata Unigene3330_C.lanceolata mRNA sequence.
JV012200.1:198-217

GTCTTTACTACAGGGCAACGCTCTTGAGAA198CAACTGTCTCCACGGTGAGACC

BOOAS89TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BOOAS89, genomic survey sequence.
BZ484078.1:361-380

TGTTTAATTAGACAGGAACGCTGTGTAGGA361CAACTGTCTCCACGGTGAGACCTGGTCCGAACCCAAACAGGACACCCCAC

KBrH010A19F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH010A19, genomic survey sequence.
CW984364.1:531-550

TTTCTGTTTAGACAGGAACGCTGTGTAGGA531CAACTGTCTCCACGGTGAGACCTGGTCCGAACCCAAACAAGACACCCCAT

Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:64777684-64777703

TGTTTAATTAGACAGGAACGCTGTGTAGGA64777684CAACTGTCTCCACGGTGAGACCTGGTCCGAACCCAAACAGGACACCCCAC

Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:11502144-11502163

TTTCTGTTTAAACAGGAACGCTGTGTAGGA11502144CAACTGTCTCCACGGTGAGACCCGGTCCGAAACCAAACAAGACACCCCAC

Capricornis sumatraensis isolate serow.1 chromosome 5.
CP135631.1:121680807-121680826

GCTCTCCCACGGCCGTGACTCGCGCGATGC121680807TCTCACCGTGGAGACAGTTGTGTGTCCGAGTATGGGGGTCGTCAGCACCC

Sequence 33 from patent US 7268276.
EA289035.1:1250-1269

ATGGGGTGTCTTGTTTGGGTTCGGACCAGG1250TCTCACCGTGGAGACAGTTGTCTTGCACAGCGTTCCTCTCTAAACAGAAA

Sequence 150 from patent US 7268276.
EA289149.1:1247-1266

ATGGGGTGTCTTGTTTGGGTTCGGACCAGG1247TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

BN40.044K04F011221 BN40 Brassica napus cDNA clone BN40044K04, mRNA sequence.
CD830189.1:638-657

GTGGGGTGTCCTGTTTGGGGTCGGACCAGG638TCTCACCGTGGAGACAGTTGTCCTACACA

44-E013336-021-002-B02q-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022B022Q, mRNA sequence.
CX192331.1:326-345

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG326TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAATTAAACA

01-E010532-021-002-B02-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022B022Q, mRNA sequence.
CX196200.1:325-344

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG325TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAATTAAACA

Brassica oleracea var. viridis mRNA, clone: KALE-063C14, 3' end sequence.
DK539290.1:640-659

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG640TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAATTAAACA

Brassica oleracea var. viridis mRNA, clone: KALE-063O04, 3' end sequence.
DK539566.1:594-613

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG594TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

Brassica oleracea var. viridis mRNA, clone: KALE-067L23, 3' end sequence.
DK541042.1:556-575

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG556TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAATTAAACA

Brassica oleracea var. viridis mRNA, clone: KALE-093I11, 3' end sequence.
DK550899.1:663-682

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG663TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTTTAAACAGAAA

Brassica oleracea var. viridis mRNA, clone: KALE-098M16, 3' end sequence.
DK552913.1:611-630

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG611TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

35ETGS60_UP_016_D07_12FEB2005_057 Brassica napus 35ETGS60 Brassica napus cDNA 5', mRNA sequence.
EE432525.1:290-309

ATGGGGTGTCTTGTTTGGGTTCGGACCAGG290TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

BNSCS4CT_UP_020_B12_18JAN2005_094 Brassica napus seed coat BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EE469206.1:462-481

ATGGGGTGTCTTGTTTGGGTTCGGACCAGG462TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

BNSCS4CT_UP_028_E11_21JAN2005_087 Brassica napus seed coat BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EE469791.1:502-521

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG502TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAATTAAACA

BNSCS5CT_UP_023_F12_21JAN2005_086 Brassica napus seed coat BNSCS5CT Brassica napus cDNA 5', mRNA sequence.
EE472341.1:580-599

ATGGGGTGTCTTGTTTGGGTTCGGACCAGG580TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

36RDBRG_UP_019_B10_12JUN2004_078 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
EE517707.1:558-577

ATGGGGTGTCCTGTTTGGTTTCGGACCAGG558TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

EX20LIB6_UP_023_D12_18MAR2004_090 Brassica napus EX20LIB6 Brassica napus cDNA 5', mRNA sequence.
ES971619.1:6-25

CCAGG6TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

EX20LIB6_UP_034_H05_24MAR2004_033 Brassica napus EX20LIB6 Brassica napus cDNA 5', mRNA sequence.
ES971934.1:6-25

CCAGG6TCTCACCGTGGAGACAGTTGTCCTACCCCGCGTTCCTGTCTAAACAGAAA

EX20LIB6_UP_062_C02_30APR2004_012 Brassica napus EX20LIB6 Brassica napus cDNA 5', mRNA sequence.
ES972739.1:6-25

CCAGG6TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACGGAAA

EX20LIB6_UP_070_D03_11MAY2004_025 Brassica napus EX20LIB6 Brassica napus cDNA 5', mRNA sequence.
ES972989.1:6-25

CCAGG6TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

EX20LIB6_UP_075_H12_20MAY2004_082 Brassica napus EX20LIB6 Brassica napus cDNA 5', mRNA sequence.
ES973138.1:6-25

CCAGG6TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

BNSCS2CT_UP_173_B03_27APR2007_029 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV028417.1:670-689

ATGGGGTGTCTTGTTTGGGTTCGGACCAGG670TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

BNSCS2CT_UP_284_C07_25MAY2007_059 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV036385.1:349-368

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG349TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAATTAAACA

BNSCS2CT_UP_322_A11_28MAY2007_095 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV039110.1:366-385

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG366TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAATTAAACA

BNSCS3CT_UP_093_D11_05MAY2007_089 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV043897.1:418-437

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG418TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAATTAAACA

BNSCS4CT_UP_077_A12_18MAY2007_096 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV064226.1:443-462

ATGGGGTGTCTTGTTTGGGTTCGGACCAGG443TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

BNSCS4CT_UP_088_E04_18MAY2007_024 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV065150.1:183-202

ATGGGGTGTCTTGTTTGGGTTCGGACCAGG183TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

BNSCS4CT_UP_106_C12_18MAY2007_092 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV066548.1:125-144

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG125TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAATTAAACA

BNSCS4CT_UP_121_H07_20MAY2007_049 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV067773.1:349-368

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG349TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAATTAAACA

BNSCS4CT_UP_135_C05_20MAY2007_043 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV068806.1:673-692

ATGGGGTGTCTTGTTTGGGTTCGGACCAGG673TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

TSA: Raphanus sativus var. sativus RNA, contig: WG3_258.
FX659045.1:1239-1258

GTGGGGTGTCTTGTTTGGTTTCGGACCGGG1239TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTTTAAACAGAAA

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_28934.
FX750471.1:672-691

GTGGGGTGTCTTGTTTGGTTTCGGACCGGG672TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTTTAAACAGAAA

Raphanus sativus cultivar WK10039 clone RsH008N23, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC255232.1:158103-158122

GTGGGGTGTCTTGTTTGGTTTCGGACCGGG158103TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTTTAAACAGAAA

Brassica napus chalcone synthase B1 (CHSB1) mRNA, complete cds.
AF076335.1:1217-1236

ATGGGGTGTCTTGTTTGGGTTCGGACCAGG1217TCTCACCGTGGAGACAGTTGTCTTGCACAGCGTTCCTCTCTAA

Brassica napus chalcone synthase B2 (CHSB2) mRNA, partial cds.
AF076336.1:1220-1239

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG1220TCTCACCGTGGAGACAGTTGTCTTGCACAGCGTTCCTCTCTA

Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:2632382-2632401

ATGGGGTGTCTTGTTTGGGTTCGGACCAGG2632382TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

Brassica rapa subsp. rapa cultivar Tsuda chalcone synthase 5 protein (CHS5) mRNA, partial cds.
GU966528.1:666-685

ATGGGGTGTCTTGTTTGGGTTCGGACCAGG666TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

Brassica napus genome assembly, chromosome: A02.
HG994356.1:2453685-2453704

ATGGGGTGTCTTGTTTGGGTTCGGACCAGG2453685TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

Brassica napus genome assembly, chromosome: C02.
HG994366.1:3520867-3520886

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG3520867TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAATTAAACA

Raphanus sativus RsCHS mRNA for chalcone synthase, partial cds.
LC202030.1:1037-1056

GTGGGGTGTCTTGTTTGGTTTCGGACCGGG1037TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTTTAAACAGAAA

Brassica rapa genome, scaffold: A02.
LR031573.1:2469642-2469661

ATGGGGTGTCCTGTTTGGTTTCGGACCAGG2469642TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:3571295-3571314

GTGGGGTGTCCTGTTTGGGTTCGGACCAGG3571295TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

Brassica rapa genome assembly, chromosome: A02.
LS974618.2:2499871-2499890

ATGGGGTGTCCTGTTTGGTTTCGGACCAGG2499871TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTCTAAACAGAAA

Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:32115992-32116011

GTGGGGTGTCTTGTTTGGTTTCGGACCGGG32115992TCTCACCGTGGAGACAGTTGTCCTACACAGCGTTCCTGTTTAAACAGAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

タブ区切りテキスト → 表示 | ダウンロード
エクセル等の表計算ソフトに直接コピペできます。
CSV形式 → 表示 | ダウンロード
エクセル等の表計算ソフトにて開くことができます。
BED形式 → リンク | ダウンロード
GFF形式 → リンク | ダウンロード
JSON形式 → リンク | ダウンロード

Debug Info:

0.009 | 0.009 | search_start;
1.278 | 1.269 | search_plus_done; http://172.18.8.135:50400/match?q=CAACTGTCTCCACGGTGAGA&k=0&no_gap=0&offset=0&limit=50
2.624 | 1.346 | search_minus_done; http://172.18.8.135:50400/match?q=TCTCACCGTGGAGACAGTTG&k=0&no_gap=0&offset=0&limit=27
2.652 | 0.028 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).