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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-12-17 18:28:14, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KBrH102B02F Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH102B02, genomic survey sequence.
DU117650.1:49-68
AACGCCGCGGTCGCTGATTTGCACGAGTCG49CAGAGCTTTGACGCCATCTCTCTCTTCTCTTCTCTCTCTATACTTCTCTC
Raphanus sativus DNA, clone: RSDH22O11_FP-1.
GA884130.1:637-656
AGCGCCGCCGTCGCTGATTTGCACGAGTCG637CAGAGCTTTGACGCCATCTCTCTCTTCTCTCTACTTCTCTCTCTCTCTCT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:4188950-4188969
AACGCCGCCGTCGCCGATTTGCACGAGTCG4188950CAGAGCTTTGACGCCATCTCTCTCTTCTCTTCTCTCTCTCTACTTCTCTC
Brassica napus cultivar Xiang5A chromosome 9.
CP151904.1:3805435-3805454
AACGCCGCCGTCGCCGATTTGCACGAGTCG3805435CAGAGCTTTGACGCCATCTCTCTCTTCTCTTCTCTCTCTCTACTTCTCTC
Brassica napus cultivar Xiang5A chromosome 19.
CP151914.1:3499142-3499161
AACGCCGCCGTCGCCGATTTGCACGAGTCG3499142CAGAGCTTTGACGCCATCTCTCTCTTCTCTTCTCTCTCTGTATTTGTTAC
Brassica napus genome assembly, chromosome: A09.
HG994363.1:3707582-3707601
AACGCCGCCGTCGCCGATTTGCACGAGTCG3707582CAGAGCTTTGACGCCATCTCTCTCTTCTCTTCTCTCTCTCTACTTCTCTC
Brassica napus genome assembly, chromosome: C09.
HG994373.1:4111430-4111449
AACGCCGCCGTCGCCGATTTGCACGAGTCG4111430CAGAGCTTTGACGCCATCTCTCTCTTCTCTTCTCTCTCTGTATTTGTTAC
Brassica rapa genome, scaffold: A09.
LR031568.1:3662875-3662894
AACGCCGCCGTCGCTGATTTGCACGAGTCG3662875CAGAGCTTTGACGCCATCTCTCTCTTCTCTTCTCTCTCTCTACTTCTCTC
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:4228195-4228214
AACGCCGCCGTCGCCGATTTGCACGAGTCG4228195CAGAGCTTTGACGCCATCTCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:3800393-3800412
AACGCCGCCGTCGCTGATTTGCACGAGTCG3800393CAGAGCTTTGACGCCATCTCTCTCTTCTCTTCTCTCTCTCTACTTCTCTC
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a013J21_T7.
AM390710.1:40-59
NNGCGTCCGCCCACGCGTCCGGAGAAGAGA40GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGGCGTT
Brassica oleracea var. viridis mRNA, clone: KALE-077E11, 5' end sequence.
DK485095.1:59-78
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGGCGTT
Brassica oleracea var. viridis mRNA, clone: KALE-149D03, 5' end sequence.
DK512594.1:67-86
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGA67GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGGCGTT
BMSA01-T7-11-F08 Brassica napus Full-length cDNA Library Brassica napus cDNA, mRNA sequence.
EG020717.1:46-65
GAGAGAAGTAGAGAGAGAGAATAGAAGAGA46GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGGCGTT
OL4586R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL4586, mRNA sequence.
EH420708.1:31-50
GAGAGAAGTAGAGAGAGAGAAGAGAAGAGA31GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGGCGTT
26RDBNT_UP_084_H08_08MAR2006_050 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
ES926844.1:49-68
GAGAGAAGTAGAGAGAGAGAAGAGAAGAGA49GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGGCGTT
26RDBNT_UP_092_F06_09MAR2006_038 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
ES927509.1:9-28
GGAAGAGA9GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGGCGTT
39RDBRT_UP_093_B04_25JAN2006_030 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
ES937218.1:48-67
ACAGAGAGAGAAGTAGAGAGATAATAGAGA48GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGGCGTT
0094894 Brassica napus Leaf library Brassica napus cDNA, mRNA sequence.
EV102571.1:85-104
GAGAGAAGTAGAGAGAGAGAAGAGAAGAGA85GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGGCGTT
BR076857 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-076F06 5', mRNA sequence.
EX090567.1:24-43
AGATAGAGAGAGAAGAGAAGAGA24GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACCGCGGCGTT
BR079789 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-135G01 5', mRNA sequence.
EX093499.1:43-62
GAGAGAAGTATAGAGAGAGAAGAGAAGAGA43GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACCGCGGCGTT
BR082255 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-024C01 5', mRNA sequence.
EX095965.1:52-71
GAGAGAAGTATAGAGAGAGAAGAGAAGAGA52GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACCGCGGCGTT
BR093941 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-017H01 5', mRNA sequence.
EX107651.1:22-41
ATAGAGAGAGAAGAGAAGAGA22GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACCGCGGCGTT
BR095780 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-047E08 5', mRNA sequence.
EX109490.1:43-62
GAGAGAAGTATAGAGAGAGAAGAGAAGAGA43GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACCGCGGCGTT
BR097370 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-070E02 5', mRNA sequence.
EX111080.1:43-62
GAGAGAAGTATAGAGAGAGAAGAGAAGAGA43GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACCGCGGCGTT
BR099524 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-100D02 5', mRNA sequence.
EX113234.1:16-35
TTGGAAGAGAAGAGA16GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACCGCGGCGTT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_1994.
FX661571.1:25-44
GAGAGAGAGAGAGAGAGAAATAGA25GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_2820.
FX701487.1:269-288
GAGAGAAGTATAGAGAGAGAAGAGAAGAGA269GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACCGCGGCGTT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2879.
FX736064.1:215-234
GAGAGAAGTATAGAGAGAGAAGAGAAGAGA215GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACCGCGGCGTT
TSA: Raphanus sativus RS00488 mRNA sequence.
JT785035.1:59-78
GAGAAGTAGAGAGAGAGAGAGAGAAATAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
TSA: Raphanus sativus RS00489 mRNA sequence.
JT785036.1:59-78
GAGAAGTAGAGAGAGAGAGAGAGAAATAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
TSA: Raphanus sativus RS00490 mRNA sequence.
JT785037.1:59-78
GAGAAGTAGAGAGAGAGAGAGAGAAATAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
TSA: Raphanus sativus RS00491 mRNA sequence.
JT785038.1:59-78
GAGAAGTAGAGAGAGAGAGAGAGAAATAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
TSA: Raphanus sativus RS00492 mRNA sequence.
JT785039.1:59-78
GAGAAGTAGAGAGAGAGAGAGAGAAATAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
TSA: Raphanus sativus RS00493 mRNA sequence.
JT785040.1:59-78
GAGAAGTAGAGAGAGAGAGAGAGAAATAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
TSA: Raphanus sativus RS00494 mRNA sequence.
JT785041.1:59-78
GAGAAGTAGAGAGAGAGAGAGAGAAATAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
TSA: Raphanus sativus RS00495 mRNA sequence.
JT785042.1:59-78
GAGAAGTAGAGAGAGAGAGAGAGAAATAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
TSA: Raphanus sativus RS00496 mRNA sequence.
JT785043.1:59-78
GAGAAGTAGAGAGAGAGAGAGAGAAATAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
TSA: Raphanus sativus RS00497 mRNA sequence.
JT785044.1:59-78
GAGAAGTAGAGAGAGAGAGAGAGAAATAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
TSA: Raphanus sativus RS00498 mRNA sequence.
JT785045.1:59-78
GAGAAGTAGAGAGAGAGAGAGAGAAATAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
TSA: Raphanus sativus RS00499 mRNA sequence.
JT785046.1:59-78
GAGAAGTAGAGAGAGAGAGAGAGAAATAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
TSA: Raphanus sativus RS00500 mRNA sequence.
JT785047.1:59-78
GAGAAGTAGAGAGAGAGAGAGAGAAATAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
TSA: Raphanus sativus RS00501 mRNA sequence.
JT785048.1:59-78
GAGAAGTAGAGAGAGAGAGAGAGAAATAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
TSA: Raphanus sativus RS00502 mRNA sequence.
JT785049.1:59-78
GAGAAGTAGAGAGAGAGAGAGAGAAATAGA59GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005E24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC190048.2:86930-86949
GAGAGAAGTATAGAGAGAGAAGAGAAGAGA86930GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACCGCGGCGTT
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:65052066-65052085
GTAACAAATACAGAGAGAGAAGAGAAGAGA65052066GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGGCGTT
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:38791016-38791035
AGAGAGAGAGAGAGAAGTAGAGAGAAGAGA38791016GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:38791016-38791035
AGAGAGAGAGAGAGAAGTAGAGAGAAGAGA38791016GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCAGCGACGGCGGCGCT
Brassica nigra genome assembly, chromosome: 7.
OZ173177.1:13024344-13024363
ATTATACAGAGAGAGAAGTTGAGAGAGAGA13024344GAGATGGCGTCAAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGGCGTT
Lissotriton helveticus genome assembly, chromosome: 2_2.
OZ180045.1:49349961-49349980
TTGAAGATGCATTTGAGGAGGGCATCTTCA49349961GAGATGGCGTCAAAGCTCTGCCAAATGTCTAAGTATTTGCGCTCCTCTGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGAGCTTTGACGCCATCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGAGCTTTGACGCCATCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.280 | 0.271 | search_plus_done; http://172.18.8.135:50800/match?q=CAGAGCTTTGACGCCATCTC&k=0&no_gap=0&offset=0&limit=50
1.512 | 1.233 | search_minus_done; http://172.18.8.135:50800/match?q=GAGATGGCGTCAAAGCTCTG&k=0&no_gap=0&offset=0&limit=40
1.540 | 0.027 | cgi_end;

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