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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-20 14:46:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

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TSA: Raphanus sativus var. sativus RNA, contig: WG3_4180.
FX660419.1:1210-1229
GAAGGTTGAATTAGGGGTTCTGATGGACAT1210CAGCTCCATTGGGATACTCATCGCCTTTGTGAAAGTGAGTACTCTCAGCG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_11000.
FX745836.1:1218-1237
GAAGGTTGAATTAGGGGTTCTGATGGACAT1218CAGCTCCATTGGGATACTCATCGCCTTTGTGAAAGTGAGTACTCTCAGCG
BOHHR24TF BOHH Brassica oleracea genomic clone BOHHR24, genomic survey sequence.
BH589098.1:509-528
GAAGGTTGAGTTAGGGTTTCTGATTGACAT509CAGCTCCATTGGGATACTCATCGCCTTGGGAAAATGAGTGAGAGTAC
SIR-4L10TF Sisymbrium irio BAC library SIR Sisymbrium irio genomic clone SIR-4L10, genomic survey sequence.
FI784642.1:905-924
CAAGCTTGAATTGTGGTATCTGATTGACAT905CAGCTCCATTGGGATACTCATCGCTTTGATCAAATGAATACTCTAAGCGA
Brassica rapa subsp. pekinensis DNA, chromosome: Linkage group A5, BAC clone: KBrB098K07.
AP011507.1:88164-88183
GAAGGTTGAGTTAGGGCTTCTGATGGACAT88164CAGCTCCATTGGGATACTCATCTCTTGATGGAAATGAATACTCTCTCAGA
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:7395628-7395647
GAAGGTTGAGTTAGGGTTTCTGATTGACAT7395628CAGCTCCATTGGGATACTCATCGCCTTGGGAAAATGAGTGAGAGTACTCT
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:3763126-3763145
GAAGGTTGAGATAGGGCTTCTGATGGACAT3763126CAGCTCCATTGGGATACTCATCTCTTGATGGAAATGAATACTCTCAGTCT
Brassica napus genome assembly, chromosome: A05.
HG994359.1:3716260-3716279
GAAGGTTGAGTTAGGGCTTCTGATGGACAT3716260CAGCTCCATTGGGATACTCATCTCTTGATGGAAATGAATACTCTCTCAGA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:7196746-7196765
GAAGGTTGAGTTAGGGTTTCTGATTGACAT7196746CAGCTCCATTGGGATACTCATCGCCTTGGGAAAATGAGTGAGAGTACTCT
Brassica rapa genome, scaffold: A05.
LR031570.1:9638817-9638836
GAAGGTTGAGTTAGGGCTTCTGATGGACAT9638817CAGCTCCATTGGGATACTCATCTCTTGATGGAAATGAATACTCTCACAGG
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:6892930-6892949
GAAGGTTGAGTTAGGGTTTCTGATTGACAT6892930CAGCTCCATTGGGATACTCATCGCCTTGGGAAAATGAGTGAGAGTACTCT
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:3720572-3720591
GAAGGTTGAGTTAGGGCTTCTGATGGACAT3720572CAGCTCCATTGGGATACTCATCTCTTGATGGAAATGAATACTCTCACAGG
Cardamine flexuosa genome assembly, chromosome: 4.
OY743217.1:3916155-3916174
CAAGGTGGAATTAGGGTTTCTGATGGACAT3916155CAGCTCCATTGGGATACTCATGGCCAGATCAAAACGTCGTCTTGGTGAGA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a017K12_SP6.
AM061108.1:74-93
TGAGAGTACTCACTCATTTTCCCAAGGCGA74TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
Thellungiella halophila cDNA clone: RTFL01-03-E01, 5'end sequence.
BY801966.1:109-128
CTTCGTCGAGTACTCATTTGATCAGAGCTA109TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAATTCGAGCTTG
Thellungiella halophila cDNA clone: RTFL01-11-P15, 5'end sequence.
BY807808.1:99-118
CTTCGTCGAGTACTCATTTGATCAGAGCTA99TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAATTCGAGCTTG
BN15.028P03F020326 BN15 Brassica napus cDNA clone BN15028P03, mRNA sequence.
CD816223.1:98-117
TCTGAGAGAGTATTCATTTCCATCAAGAGA98TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTAACTCAACCTTC
BN25.062A12F011130 BN25 Brassica napus cDNA clone BN25062A12, mRNA sequence.
CD825857.1:95-114
TCTGAGAGAGTATTCATTTCCATCAAGAGA95TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTAACTCAACCTTC
BN45.040F11F011019 BN45 Brassica napus cDNA clone BN45040F11, mRNA sequence.
CD834022.1:96-115
TCTGAGAGAGTATTCATTTCCATCAAGAGA96TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTAACTCAACCTTC
BN45.041I12F011207 BN45 Brassica napus cDNA clone BN45041I12, mRNA sequence.
CD834367.1:96-115
TCTGAGAGAGTATTCATTTCCATCAAGAGA96TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTAACTCAACCTTC
Brassica rapa subsp. pekinensis mRNA, clone: BRest01-E18, 5'-end sequence.
DC844051.1:72-91
TCTGAGAGAGTATTCATTTCCATCAAGAGA72TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTAACTCAACCTTC
Brassica oleracea var. viridis mRNA, clone: KALE-025A06, 5' end sequence.
DK465113.1:89-108
AGAGTACTCTCACTCATTTTCCCAAGGCGA89TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
Brassica oleracea var. viridis mRNA, clone: KALE-066B18, 5' end sequence.
DK480816.1:93-112
AGAGTACTCTCACTCATTTTCCCAAGGCGA93TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
Brassica oleracea var. viridis mRNA, clone: KALE-066K13, 5' end sequence.
DK481027.1:93-112
AGAGTACTCTCACTCATTTTCCCAAGGCGA93TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
Brassica oleracea var. viridis mRNA, clone: KALE-080D23, 5' end sequence.
DK486231.1:93-112
AGAGTACTCTCACTCATTTTCCCAAGGCGA93TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
Brassica oleracea var. viridis mRNA, clone: KALE-080N06, 5' end sequence.
DK486454.1:89-108
AGAGTACTCTCACTCATTTTCCCAAGGCGA89TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
Brassica oleracea var. viridis mRNA, clone: KALE-096D03, 5' end sequence.
DK492340.1:100-119
AGAGTACTCTCACTCATTTTCCCAAGGCGA100TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
47RDOAH_UP_028_F05_16AUG2004_037 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
DY027994.1:88-107
TGAGAGTACTCACTCATTTTCCCAAGGCGA88TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
20ACACDS_UP_014_G01_04NOV2004_003 Brassica napus 20ACACDS Brassica napus cDNA 5', mRNA sequence.
EE406637.1:45-64
AGAGTACTCTCACTCATTTTCCCAAGGCGA45TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
35ETGS60_UP_004_C06_29MAR2004_044 Brassica napus 35ETGS60 Brassica napus cDNA 5', mRNA sequence.
EE431435.1:100-119
AGAGTACTCTCACTCATTTTCCCAAGGCGA100TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
73ETGS36_UP_019_G06_21MAY2005_036 73ETGS36 Brassica napus cDNA 5', mRNA sequence.
EE446316.1:88-107
AGAGTACTCTCACTCATTTTCCCAAGGCGA88TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
BNZB_UP_110_D04_19AUG2004_026 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE564594.1:120-139
AGAGTACTCTCACTCATTTTCCCAAGGCGA120TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
OL8746R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8746, mRNA sequence.
EH428677.1:72-91
TGAGAGTACTCACTCATTTTCCCAAGGCGA72TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
65JKBNMO_UP_058_F03_17JUL2006_021 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL591547.1:94-113
AGACTGAGAGCATTCATTTCCATCAAGAGA94TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTATCTCAACCTTC
EST0759 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B035C091, mRNA sequence.
EL623253.1:93-112
AGAGTACTCTCACTCATTTTCCCAAGGCGA93TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
DHBN6DCT_UP_026_C01_18FEB2005_011 Brassica napus DHBN6DCT Brassica napus cDNA 5', mRNA sequence.
EV012492.1:88-107
AGAGTACTCTCACTCATTTTCCCAAGGCGA88TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
DHBN8DCT_UP_031_E02_19FEB2005_008 Brassica napus DHBN8DCT Brassica napus cDNA 5', mRNA sequence.
EV013235.1:109-128
AGACTGAGAGTATTCATTTCCATCAAGAGA109TGAGTATCCCAATGGAGCTGATG
BNSCS3CT_UP_229_D02_14MAY2007_010 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV055026.1:93-112
AGAGTACTCTCACTCATTTTCCCAAGGCGA93TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
0158437 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV184006.1:127-146
AGACTGAGAGTATTCATTTCCATCAAGAGA127TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTAACTCAACCTTC
0160072 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV185027.1:126-145
AGACTGAGAGTATTCATTTCCATCAAGAGA126TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTAACTCAACCTTC
0200285 Brassica napus Undamaged cotyledons Brassica napus cDNA, mRNA sequence.
EV186078.1:107-126
AGAGTACTCTCACTCATTTTCCCAAGGCGA107TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC
RR2A096TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV534910.1:32-51
GGAGAGTACTTAATTCTTTTCACAAGGCAA32TGAGTATCCCAATGGAGCTGATGTCCATCAGAACCCCTAATTCAACCTTC
RS1AN62TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW715867.1:82-101
CGCTGAGAGTACTCATTTTCACAAAGGCGA82TGAGTATCCCAATGGAGCTGATGTCCATCAGAACCCCTAATTCAACCTTC
RS3AX78TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EW733723.1:98-117
CGAGAGTACTTAATTCTTTTCACAAGGCGA98TGAGTATCCCAATGGAGCTGATGTCCATCAGAACCCCTAATTCAACCTTC
BR030244 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-147D10 5', mRNA sequence.
EX045600.1:41-60
TCTGAGAGAGTATTCATTTCCATCAAGAGA41TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTAACTCAACCTTC
BR039864 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-150H03 5', mRNA sequence.
EX055220.1:38-57
TCTGAGAGAGTATTCATTTCCATCAAGAGA38TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTAACTCAACCTTC
BR079039 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-110D04 5', mRNA sequence.
EX092749.1:95-114
TCTGAGAGAGTATTCATTTCCATCAAGAGA95TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTAACTCAACCTTC
BR082271 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-024D08 5', mRNA sequence.
EX095981.1:55-74
TCTGAGAGAGTATTCATTTCCATCAAGAGA55TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTAACTCAACCTTC
BR084544 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-002B02 5', mRNA sequence.
EX098254.1:142-161
TCTGAGAGAGTATTCATTTCCATCAAGAGA142TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTAACTCAACCTTC
BR125238 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-42H10 5', mRNA sequence.
EX141408.1:41-60
TCTGAGAGAGTATTCATTTCCATCAAGAGA41TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTAACTCAACCTTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_2175.
FX701908.1:145-164
TCTGAGAGAGTATTCATTTCCATCAAGAGA145TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTAACTCAACCTTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_7190.
FX736657.1:126-145
TCTGAGAGAGTATTCATTTCCATCAAGAGA126TGAGTATCCCAATGGAGCTGATGTCCATCAGAAGCCCTAACTCAACCTTC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:55278767-55278786
CGCTGAGAGTACTCACTTTCACAAAGGCGA55278767TGAGTATCCCAATGGAGCTGATGTCCATCAGAACCCCTAATTCAACCTTC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:55278767-55278786
CGCTGAGAGTACTCACTTTCACAAAGGCGA55278767TGAGTATCCCAATGGAGCTGATGTCCATCAGAACCCCTAATTCAACCTTC
Brassica oleracea var. botrytis non-green plastid inner envelope membrane protein precursor (BOIMP8) mRNA, complete cds.
U13631.1:32-51
AGAGTACTCTCACTCATTTTCCCAAGGCGA32TGAGTATCCCAATGGAGCTGATGTCAATCAGAAACCCTAACTCAACCTTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGCTCCATTGGGATACTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGCTCCATTGGGATACTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.170 | 0.161 | search_plus_done; http://172.18.8.135:50400/match?q=CAGCTCCATTGGGATACTCA&k=0&no_gap=0&offset=0&limit=50
2.205 | 2.035 | search_minus_done; http://172.18.8.135:50400/match?q=TGAGTATCCCAATGGAGCTG&k=0&no_gap=0&offset=0&limit=37
2.233 | 0.028 | cgi_end;

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