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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-07 05:07:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:11494062-11494081
TTTCTTTTTCTTCTTCTACTATCTCACCTT11494062CGTCTTCGTTATGGTGCCTTTCATTCTCTACACTGGGTAAGTTTGTGGAG
Brassica oleracea var. viridis mRNA, clone: KALE-131N17, 5' end sequence.
DK505976.1:497-516
CTCCACAAACTTACCCAGTGTAGAGGATGA497AAGGCACCATAACGAAGACGAAGGTGAGATAGTAGAAGAAGAAAAAGAAA
Brassica oleracea var. viridis mRNA, clone: KALE-050E11, 3' end sequence.
DK534376.1:729-748
CTCCACAAACTTACCCAGTGTAGAGGATGA729AAGGCACCATAACGAAGACGAAGGTGAGATAGTAGAAGAAG
BNYS4DCT_UP_030_C03_22MAR2005_027 Brassica napus seeds BNYS4DCT Brassica napus cDNA 5', mRNA sequence.
EE477853.1:474-493
CTCCACAAACTTACCCAGTGTAGAGAATGA474AAGGCACCATAACGAAGACGAAGGTGAGATAGTAGAAGAAGAGAAAGACA
odh36g04.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH954941.1:367-386
CTCCACAAACTTACCCAGTGTAGAGAATGA367AAGGCACCATAACGAAGACGAAGGTGAGATAGTAGAAGAAGAAAAAGAAA
Brassica napus genome assembly, chromosome: C07.
HG994371.1:44308561-44308580
CTCCACAAACTTACCCAGTGTAGAGAATGA44308561AAGGCACCATAACGAAGACGAAGGTGAGATAGTAGAAGAAGAAAAAGAAA
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:47178191-47178210
CTCCACAAACTTACCCAGTGTAGAGAATGA47178191AAGGCACCATAACGAAGACGAAGGTGAGATAGTAGAAGAAGAAAAAGAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGTCTTCGTTATGGTGCCTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTCTTCGTTATGGTGCCTT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.103 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=CGTCTTCGTTATGGTGCCTT&k=0&no_gap=0&offset=0&limit=50
0.267 | 0.163 | search_minus_done; http://172.18.8.135:50400/match?q=AAGGCACCATAACGAAGACG&k=0&no_gap=0&offset=0&limit=49
0.271 | 0.004 | cgi_end;

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