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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-15 02:02:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a014N08_SP6.
AM387123.1:185-206
TAAACACAGTTTAGATAACAGAGCCAGTTT185GAGGACCAATAAGCCCAACAACCTCATCCCAAAGACCATGACTTTGAACAGC
OL4282F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL4282, mRNA sequence.
EH420099.1:157-178
TAAACACAGTTTAGATAACAGAGCCAGTTT157GAGGACCAATAAGCCCAACAACCTCATCCCAAAGACCATGACTTTGAACAGC
RR3A648JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV543851.1:103-124
AAACTCATTACATGAAAACAGAGCCAGTTT103GAGGACCAATAAGCCCAACAACCTCATCCCAAAGACCATGACTTTGGACATC
RR3AZ95JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV546041.1:106-127
AAACTCATTACATGAAAACAGAGCCAGTTT106GAGGACCAATAAGCCCAACAACCTCATCCCAAAGACCATGACTTTGGACATC
RS1CP52JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX893721.1:116-137
AAACTCATTACATGAAAACAGAGCCAGTTT116GAGGACCAATAAGCCCAACAACCTCATCCCAAAGACCATGACTTTGGACATC
RS2FZ96JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD575921.1:116-137
AAACTCATTACATGAAAACAGAGCCAGTTT116GAGGACCAATAAGCCCAACAACCTCATCCCAAAGACCATGACTTTGGACATC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_13637.
FX663908.1:83-104
AAACTCATTACATGAAAACAGAGCCAGTTT83GAGGACCAATAAGCCCAACAACCTCATCCCAAAGACCATGACTTTGGACATC
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:7379197-7379218
GTTTAGAACTTTAGATAACAGAACCAGTTT7379197GAGGACCAATAAGCCCAACAACCTCATCCCAAAGACCATGACTTTGAACAGC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:14370788-14370809
AAACTCATTACATGAAAACAGAGCCAGTTT14370788GAGGACCAATAAGCCCAACAACCTCATCCCAAAGACCATGACTTTGGACATC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:14370788-14370809
AAACTCATTACATGAAAACAGAGCCAGTTT14370788GAGGACCAATAAGCCCAACAACCTCATCCCAAAGACCATGACTTTGGACATC
Brassica oleracea var. viridis mRNA, clone: KALE-010N18, 3' end sequence.
DK519327.1:592-613
GCTGTTCAAAGTCATGGTCTTTGGGATGAG592GTTGTTGGGCTTATTGGTCCTCAAACTGGCTCTGTTATCTAAACTGTGTTTA
Brassica oleracea var. viridis mRNA, clone: KALE-052K03, 3' end sequence.
DK535265.1:567-588
GCTGTTCAAAGTCATGGTCTTTGGGATGAG567GTTGTTGGGCTTATTGGTCCTCAAACTGGCTCTGTTATCTAAACTGTGTTTA
Brassica oleracea var. viridis mRNA, clone: KALE-062C14, 3' end sequence.
DK538907.1:626-647
GCTGTTCAAAGTCATGGTCTTTGGGATGAG626GTTGTTGGGCTTATTGGTCCTCAAACTGGCTCTGTTATCTAAACTGTGTTTA
Brassica oleracea var. viridis mRNA, clone: KALE-127J12, 3' end sequence.
DK563906.1:631-652
GCTGTTCAAAGTCATGGTCTTTGGGATGAG631GTTGTTGGGCTTATTGGTCCTCAAACTGGCTCTGTTATCTAAACTGTGTTTA
altr012xe09 A. brassicicola mycelial culture infecting B. oleracea Alternaria brassicicola cDNA clone altr012xe09, mRNA sequence.
DN478783.1:147-168
GCTGTTCAAAGTCATGGTCTTTGGGATGAG147GTTGTTGGGCTTATTGGTCCTCAAACTGGCTCTGTTATCTAAACTGTGTTTA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_33634.
FX792765.1:846-867
GATGTCCAAAGTCATGGTCTTTGGGATGAG846GTTGTTGGGCTTATTGGTCCTCAAAC
Brassica napus genome assembly, chromosome: C02.
HG994366.1:55086942-55086963
GCTGTTCAAAGTCATGGTCTTTGGGATGAG55086942GTTGTTGGGCTTATTGGTCCTCAAACTGGTTCTGTTATCTAAAGTTCTAAAC
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:56216321-56216342
GCTGTTCAAAGTCATGGTCTTTGGGATGAG56216321GTTGTTGGGCTTATTGGTCCTCAAACTGGTTCTGTTATCTAAAGTTCTAAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAGGACCAATAAGCCCAACAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGGACCAATAAGCCCAACAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.527 | 0.518 | search_plus_done; http://172.18.8.135:50400/match?q=GAGGACCAATAAGCCCAACAAC&k=0&no_gap=0&offset=0&limit=50
0.793 | 0.266 | search_minus_done; http://172.18.8.135:50400/match?q=GTTGTTGGGCTTATTGGTCCTC&k=0&no_gap=0&offset=0&limit=40
0.798 | 0.006 | cgi_end;

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