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2025-04-10 05:16:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

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Sequence 95466 from Patent WO2008034648.
FB876193.1:1798-1818

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1798GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Sequence 95520 from Patent WO2008034648.
FB876247.1:1795-1815

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1795GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT

Sequence 95466 from Patent EP2090662.
HB746252.1:1798-1818

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1798GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Sequence 95520 from Patent EP2090662.
HB746306.1:1795-1815

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1795GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT

Sequence 4 from patent US 5484905.
I17186.1:1798-1818

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1798GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT

Brassica oleracea SRK2-b mRNA, complete cds.
AB024416.1:1795-1815

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1795GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT

Brassica rapa SRK-60, SLG-60 genes for S receptor kinase, S-locus glycoprotein, partial cds.
AB097116.1:29791-29811

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT29791GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Brassica oleracea S-15 SRK gene for S-locus receptor kinase, complete cds.
AB180903.1:16283-16303

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT16283GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Brassica rapa SRK40 mRNA for S-receptor kinase, complete cds.
AB211197.1:1798-1818

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1798GAGGGCGAGAAGATCTTAATTTACGAGTACATGGAGAATTTAAGCCTCGAT

Brassica rapa SRK44 mRNA for S-receptor kinase, complete cds.
AB211198.1:1795-1815

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1795GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT

Brassica napus BnSRK-6 mRNA for S receptor kinase, partial cds.
AB270768.1:1789-1809

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1789GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Brassica napus BnSRK-6 gene for S receptor kinase, complete cds.
AB270772.1:7707-7727

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT7707GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Brassica rapa SRK-40 mRNA for S-locus receptor kinase, partial cds.
AB298880.1:493-513

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT493GAGGGCGAGAAGATCTTAATTTACGAGTACATGGAGAATTTAAGCCTCGAT

Brassica rapa SRK-44 mRNA for S-locus receptor kinase (kinase domain), partial cds.
AB298882.1:493-513

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT493GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT

Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:47277837-47277857

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT47277837GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Brassica cretica haplotype Bcr202b SRK protein gene, exons 4 through 6 and partial cds.
FJ670487.1:2-22

T2GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Brassica cretica haplotype Bcr203b SRK protein gene, exons 4 through 7 and partial cds.
FJ670489.1:2-22

T2GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Brassica cretica haplotype Bcr203c SRK protein gene, exons 4 through 7 and partial cds.
FJ670490.1:2-22

T2GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Brassica cretica haplotype Bcr203d SRK protein gene, exons 4 through 7 and partial cds.
FJ670491.1:2-22

T2GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Brassica cretica haplotype Bcr204c SRK protein gene, exons 4 through 7 and partial cds.
FJ670494.1:2-22

T2GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT

Brassica cretica haplotype Bcr206a SRK protein gene, exons 4 through 7 and partial cds.
FJ670496.1:2-22

T2GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT

Brassica napus genome assembly, chromosome: C06.
HG994370.1:41273852-41273872

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT41273852GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Brassica oleracea var. italica haplotype BOI1 SRK protein gene, partial cds.
JQ253785.1:1-21

1GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT

Brassica rapa BrSRK-44 mRNA for S-locus receptor kinase, complete cds.
LC556299.1:1795-1815

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1795GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT

Brassica rapa genome, scaffold: A07.
LR031574.1:22490496-22490516

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT22490496GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Brassica rapa genome assembly, chromosome: A07.
LS974623.2:22781636-22781656

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT22781636GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Brassica oleracea mRNA for SRK5 protein, partial.
Y18259.1:1778-1798

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1778GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT

Brassica oleracea mRNA for SRK15 protein, partial.
Y18260.1:1769-1789

CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1769GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

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Debug Info:

0.008 | 0.008 | search_start;
0.234 | 0.226 | search_plus_done; http://172.18.8.135:50400/match?q=GAGGGCGAGAAGATCTTAATT&k=0&no_gap=0&offset=0&limit=50
0.281 | 0.047 | search_minus_done; http://172.18.8.135:50400/match?q=AATTAAGATCTTCTCGCCCTC&k=0&no_gap=0&offset=0&limit=22
0.281 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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