GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-17 18:28:00, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:21793067-21793086
AGTCATCAACTTGCTGGAGAGCAACCACCA21793067GATCCTGCAAGAGAACTCGCAGCTGAAGGAGAAAGTCTCTTCTTTTCAAT
Brassica napus cultivar Xiang5A chromosome 3.
CP151898.1:21793110-21793129
AGTCATCAACTTGCTGGAGAGCAACCACCA21793110GATCCTGCAAGAGAACTCGCAGCTGAAGGAGAAAGTCTCTTCTTTTCAAT
Brassica napus cultivar Xiang5A chromosome 17.
CP151912.1:50964766-50964785
AGTCATCAACTTGCTGGAAAGCAACCACCA50964766GATCCTGCAAGAGAACTCGCAGCTGAAGGAGAAAGTCTCTTCTTTTCAAT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:21779329-21779348
AGTCATCAACTTGCTGGAGAGCAACCACCA21779329GATCCTGCAAGAGAACTCGCAGCTGAAGGAGAAAGTCTCTTCTTTTCAAT
Brassica napus genome assembly, chromosome: C07.
HG994371.1:44948585-44948604
AGTCATCAACTTGCTGGAAAGCAACCACCA44948585GATCCTGCAAGAGAACTCGCAGCTGAAGGAGAAAGTCTCTTCTTTTCAAT
Brassica rapa genome, scaffold: A03.
LR031572.1:21603926-21603945
AGTCATCAACTTGCTGGAGAGCAACCACCA21603926GATCCTGCAAGAGAACTCGCAGCTGAAGGAGAAAGTCTCTTCTTTTCAAT
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:47817165-47817184
AGTCATCAACTTGCTGGAAAGCAACCACCA47817165GATCCTGCAAGAGAACTCGCAGCTGAAGGAGAAAGTCTCTTCTTTTCAAT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:21731987-21732006
AGTCATCAACTTGCTGGAGAGCAACCACCA21731987GATCCTGCAAGAGAACTCGCAGCTGAAGGAGAAAGTCTCTTCTTTTCAAT
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:10842296-10842315
ATTGAAAAGAAGAGACTTTCTCCTTCAGCT10842296GCGAGTTCTCTTGCAGGATCTGGTGGTTGCTTTCCAGCAAGTTGATGACT
Cochlearia excelsa genome assembly, chromosome: 4.
OY748330.1:1690760-1690779
AGTGAAAGGAAGAGACTCTCTCTTTGAGCT1690760GCGAGTTCTCTTGCAGGATCTGGTGGTTGCTTTCTAACAAATTAATGACT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GATCCTGCAAGAGAACTCGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GATCCTGCAAGAGAACTCGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.189 | 0.180 | search_plus_done; http://172.18.8.135:50800/match?q=GATCCTGCAAGAGAACTCGC&k=0&no_gap=0&offset=0&limit=50
0.306 | 0.117 | search_minus_done; http://172.18.8.135:50800/match?q=GCGAGTTCTCTTGCAGGATC&k=0&no_gap=0&offset=0&limit=42
0.308 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).