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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-12-17 23:44:22, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Bradypus torquatus genome assembly, chromosome: 16.
OZ022614.1:52478453-52478472
GAGACTCAGAGCCATAGGGTCTGAGATCGA52478453GGATGGTGACTCGAGGAAGAGATGTGGAAAGCAGAAAACCAAGGTGGCTG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_6122.
FX734999.1:1101-1120
ACGGAGAGGAAGGGTTTGTGGGTTTGTTAG1101GGATGGTGACTCGAGGAAGAGAAAGGGAGAAGCAAGAGATCGTCGTCGTC
Brassica napus cultivar Xiang5A chromosome 19.
CP151914.1:7391277-7391296
ACGGAGAGGAAGGGTTTGTGGGTTTGTTAC7391277GGATGGTGACTCGAGGAAGAGAAAGGGAGAAGCAAGAGATCGTCGTCGTC
Brassica napus genome assembly, chromosome: C09.
HG994373.1:7936734-7936753
ACGGAGAGGAAGGGTTTGTGGGTTTGTTAC7936734GGATGGTGACTCGAGGAAGAGAAAGGGAGAAGCAAGAGATCGTCGTCGTC
Brassica rapa genome, scaffold: A09.
LR031568.1:6037961-6037980
ACGGAGAGGAAGGGTTTGTGGGTTTGTTAC6037961GGATGGTGACTCGAGGAAGAGAAAGGGAGAAGCAAGAGATCGTCGTCGTC
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:7937825-7937844
ACGGAGAGGAAGGGTTTGTGTGTTTGTTAC7937825GGATGGTGACTCGAGGAAGAGAAAGGGAGAAGCAAGAGATCGTCGTCGTC
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:6240286-6240305
ACGGAGAGGAAGGGTTTGTGGGTTTGTTAC6240286GGATGGTGACTCGAGGAAGAGAAAGGGAGAAGCAAGAGATCGTCGTCGTC
Sus scrofa scrofa breed NS chromosome 6.
CP071557.1:7170298-7170317
TTATGGGAGAGATGGGTCCTTTTGGTAGAA7170298TCTTCCTCGAGTCACCATCCAAGATATCAGTAACAGGGTGAAGACATTCA
Sus scrofa genome assembly, chromosome: 6.
OY997213.1:7490661-7490680
TTATGGGAGAGATGGGTCCTTTTGGTAGAA7490661TCTTCCTCGAGTCACCATCCAAGATATCAGTAACAGGGTGAAGACATTCA
BN25.061I21F011129 BN25 Brassica napus cDNA clone BN25061I21, mRNA sequence.
CD825702.1:138-157
GACGACGACGATCTCTTGCTTCTCCCTTTC138TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
BN45.049E08F020103 BN45 Brassica napus cDNA clone BN45049E08, mRNA sequence.
CD836603.1:164-183
GACGACGACGATCTCTTGCTTCTCCCTTTC164TCTTCCTCGAGTCACCATCCCTAACAAACCCACAAACCCTTCCTCTCCGT
BN45.051E07F020107 BN45 Brassica napus cDNA clone BN45051E07, mRNA sequence.
CD837157.1:109-128
GACGACGACGATCTCTTGCTTCTCCCTTTC109TCTTCCTCGAGTCACCATCCCTAACAAACCCACAAACCCTTCCTCTCCGT
38RDBRM_UP_002_B06_30MAR2004_046 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX265678.1:134-153
GACGACGACGATCTCTTGCTTCTCCCTTTC134TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
38RDBRM_UP_005_C09_30MAR2004_075 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX265955.1:130-149
GACGACGACGATCTCTTGCTTCTCCCTTTC130TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
Brassica oleracea var. viridis mRNA, clone: KALE-003J20, 5' end sequence.
DK456944.1:110-129
GACGACGACGATCTCTTGCTTCTCCCTTTC110TCTTCCTCGAGTCACCATCCGTAACAAACACACAAACCCTTCCTCTCCGT
Brassica oleracea var. viridis mRNA, clone: KALE-024O18, 5' end sequence.
DK465077.1:124-143
GACGACGACGATCTCTTGCTTCTCCCTTTC124TCTTCCTCGAGTCACCATCCGTAACAAACACACAAACCCTTCCTCTCCGT
Brassica oleracea var. viridis mRNA, clone: KALE-037K02, 5' end sequence.
DK469934.1:123-142
GACGACGACGATCTCTTGCTTCTCCCTTTC123TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
Brassica oleracea var. viridis mRNA, clone: KALE-040G07, 5' end sequence.
DK470990.1:123-142
GACGACGACGATCTCTTGCTTCTCCCTTTC123TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
Brassica oleracea var. viridis mRNA, clone: KALE-052F23, 5' end sequence.
DK475562.1:153-172
GACGACGACGATCTCTTGCTTCTCCCTTTC153TCTTCCTCGAGTCACCATCCGTAACAAACACACAAACCCTTCCTCTCCGT
Brassica oleracea var. viridis mRNA, clone: KALE-065F21, 5' end sequence.
DK480533.1:168-187
GACGACGACGATCTCTTGCTTCTCCCTTTC168TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
Brassica oleracea var. viridis mRNA, clone: KALE-069O06, 5' end sequence.
DK482266.1:123-142
GGCGACGACGATCTCTTGCTTCTCCCTTTC123TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
Brassica oleracea var. viridis mRNA, clone: KALE-092O10, 5' end sequence.
DK491076.1:166-185
GACGACGACGATCTCTTGCTTCTCCCTTTC166TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
Brassica oleracea var. viridis mRNA, clone: KALE-125M09, 5' end sequence.
DK503647.1:115-134
GACGACGACGATCTCTTGCTTCTCCCTTTC115TCTTCCTCGAGTCACCATCCGTAACAAACACACAAACCCTTCCTCTCCGT
Brassica oleracea var. viridis mRNA, clone: KALE-146L18, 5' end sequence.
DK511653.1:123-142
GACGACGACGATCTCTTGCTTCTCCCTTTC123TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
Brassica oleracea var. viridis mRNA, clone: KALE-151H21, 5' end sequence.
DK513474.1:168-187
GACGACGACGATCTCTTGCTTCTCCCTTTC168TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
36RDBRG_UP_046_D03_25JUN2004_025 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
EE519982.1:144-163
GACGACGACGATCTCTTGCTTCTCCCTTTC144TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGC
36RDBRG_UP_067_E11_29NOV2005_087 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
EE521541.1:144-163
GACGACGACGATCTCTTGCTTCTCCCTTTC144TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
BNQA_UP_067_A03_31MAY2005_031 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE552030.1:84-103
GACGACGACGATCTCTTGCTTCTCCCTTTC84TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
38RDBRM_UP_079_E04_18JAN2006_024 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
ES934406.1:124-143
GACGACGACGATCTCTTGCTTCTCCCTTTC124TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
BR062013 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-006B02 5', mRNA sequence.
EX077369.1:86-105
GACGACGACGATCTCTTGCTTCTCCCTTTC86TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
BR075711 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-061G01 5', mRNA sequence.
EX089421.1:137-156
GACGACGACGATCTCTTGCTTCTCCCTTTC137TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
BN18DYSC_UP_195_C10_4APR2008_076 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG569585.1:128-147
GACGACGACGATCTCTTGCTTCTCCCTTTC128TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF06D04, 5'-end sequence.
FY065566.1:151-170
GACGACGACGATCTCTTGCTTCTCCCTTTC151TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
g07_14na_1f.s 14na Brassica napus cDNA clone g07_14na_1f 5, mRNA sequence.
GT083658.1:100-119
GACGACGACGATCTCTTGCTTCTCCCTTTC100TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:61159931-61159950
GACGACGACGATCTCTTGCTTCTCCCTTTC61159931TCTTCCTCGAGTCACCATCCGTAACAAACCCACAAACCCTTCCTCTCCGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGATGGTGACTCGAGGAAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGATGGTGACTCGAGGAAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.150 | 0.140 | search_plus_done; http://172.18.8.135:50800/match?q=GGATGGTGACTCGAGGAAGA&k=0&no_gap=0&offset=0&limit=50
1.166 | 1.017 | search_minus_done; http://172.18.8.135:50800/match?q=TCTTCCTCGAGTCACCATCC&k=0&no_gap=0&offset=0&limit=43
1.185 | 0.019 | cgi_end;

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