GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-18 02:01:16, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Canis lupus genome assembly, chromosome: 8.
HG994390.1:48435516-48435535
TTCTTGCACACAAATCCTCAACTCAGGGTC48435516TGCTTCTGGGGAAATGACTTAAAATTCTGTGCAATGGAAAAATTCAAGAC
Vulpes vulpes genome assembly, chromosome: 9.
OZ067170.1:48925046-48925065
TTCTTGCACACAAATCCTCAACTCAGGGTC48925046TGCTTCTGGGGAAATGACTTAAAATTCTGTGCAATGGAAAAATTCAAAGA
Vulpes vulpes genome assembly, chromosome: 9.
OZ067321.1:49312182-49312201
TTCTTGCACACAAATCCTCAACTCAGGGTC49312182TGCTTCTGGGGAAATGACTTAAAATTCTGTGCAATGGAAAAATTCAAAGA
CsB10STC_Bam_71M04R_587 ends of BAC library of B10 line of Cucumis sativus L. (BamHI) Cucumis sativus genomic, genomic survey sequence.
GS866682.1:66-85
TGTTCACCAAAATCCTTGCCAAAGTCGACA66TGCTTCTGGGGAAATGACTTCTGAAGATTTATTGGTGAAAGATGGAGTTG
Cucumis melo genomic chromosome, chr_11.
LN713265.1:26704213-26704232
TGTTCAGCAAAGTCCTTGCCAAAGTAGACA26704213TGCTTCTGGGGAAATGACTTCTGAAGGTTTATTGGTGAAAGATGGAGTTG
Euphrasia confusa genome assembly, chromosome: 6.
OX940954.1:6729957-6729976
GCGAAGGAAATAGCGTTGGTTAGGAGTTCG6729957TGCTTCTGGGGAAATGACTTTAGAGGCCATCCTTGGCTTCCAGATACCCA
Cicadella viridis genome assembly, chromosome: 2.
OZ123656.1:56855224-56855243
TCCTGCACATTGGAGGTCTGTGTAGGACAC56855224TGCTTCTGGGGAAATGACTTTCTGCGAAAGGGTGAGTGATGGCAGTATGG
Protomyctophum parallelum genome assembly, chromosome: 2.
OZ077168.1:5166207-5166226
CTACTGGACTGGGATGTGACCTTTCCTTGT5166207TGCTTCTGGGGAAATGACTTCAATGCAAGTCAACGGGTGAACAACTCTGT
Micromys minutus genome assembly, chromosome: 15.
OZ004795.1:26186728-26186747
TGAAACTTTACTTATATGGCAGGGTTTTAG26186728AAGTCATTTCCCCAGAAGCAGCAAGTGGAACGTGGTTGCTAAGGAATGGG
Felis catus Senzu DNA, chromosome: B3, American Shorthair breed.
AP023157.1:99811064-99811083
GAAATGAAATTTTCCACTGCACAGAATTTT99811064AAGTCATTTCCCCAGAAGCAGACCCTGGGATGAGGATTTGTGTGCAAGAA
Canis lupus familiaris breed Labrador retriever chromosome 08a.
CP050567.1:27120235-27120254
GTCTTGAATTTTTCCATTGCACAGAATTTT27120235AAGTCATTTCCCCAGAAGCAGACCCTGAGTTGAGGATTTGTGTGCAAGAA
Canis lupus familiaris breed Labrador retriever chromosome 08b.
CP050639.1:27116386-27116405
GTCTTGAATTTTTCCATTGCACAGAATTTT27116386AAGTCATTTCCCCAGAAGCAGACCCTGAGTTGAGGATTTGTGTGCAAGAA
Halichoerus grypus genome assembly, chromosome: 8.
OZ210067.1:105018604-105018623
GCCTTGAATTTTTCCATTGCACAGAATTTT105018604AAGTCATTTCCCCAGAAGCAGACCCTGAAATAAGGATTTGGGTGCAAGAA
Cucumis melo isolate PI 511890 chromosome 11.
CP136111.1:4659488-4659507
CAACTCCATCTTTCACCAATAAACCTTCAG4659488AAGTCATTTCCCCAGAAGCATGTCTACTTTGGCAAGGACTTTGCTGAACA
Cucumis melo genomic scaffold, anchoredscaffold00047.
LN681924.1:2264080-2264099
CAACTCCATCTTTCACCAATAAACCTTCAG2264080AAGTCATTTCCCCAGAAGCATGTCTACTTTGGCAAGGACTTTGCTGAACA
Arenicola marina genome assembly, chromosome: 8.
OZ025255.1:42760377-42760396
CTTGTGTGGGTAAATTATATTATTTTTACG42760377AAGTCATTTCCCCAGAAGCAGGCCTTTAATATTATGATGGAGGGACTAGT
Neostethus bicornis genome assembly, chromosome: 10.
LR738561.1:5142545-5142564
ATGGGAAATGTATTTTTCAAAATGGATTAT5142545AAGTCATTTCCCCAGAAGCAGTTCGGATTGGGGTATGAGTCCTACTACTC
Lucania goodei rhodopsin-like opsin 1 (RH2-1) and rhodopsin-like opsin 2 (RH2-2) genes, complete cds.
MT850056.1:7243405-7243424
ATAGCAGGGGGAAAAAAATATCTCATTTTC7243405AAGTCATTTCCCCAGAAGCATACAAACCCAGCTTTCGATCTTATTTGGAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGCTTCTGGGGAAATGACTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCTTCTGGGGAAATGACTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.204 | 0.194 | search_plus_done; http://172.18.8.135:50800/match?q=TGCTTCTGGGGAAATGACTT&k=0&no_gap=0&offset=0&limit=50
0.314 | 0.110 | search_minus_done; http://172.18.8.135:50800/match?q=AAGTCATTTCCCCAGAAGCA&k=0&no_gap=0&offset=0&limit=42
0.321 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).