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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-08 08:06:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 5846 from Patent WO2008034648.
FB786573.1:6-25
ATGAA6TGCTTTAGCCGCAACGAACAGGAACTTCCGTCATGCCTCACGAATCCTCG
Sequence 5846 from Patent EP2090662.
HB656632.1:6-25
ATGAA6TGCTTTAGCCGCAACGAACAGGAACTTCCGTCATGCCTCACGAATCCTCG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a002A17_T7.
AM388283.1:104-123
TCACATTTTGATTTGATTTTGAGCCATGAA104TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a002N21_T7.
AM388468.1:124-143
TCACATTTTGATTTGATTTTGAGCCATGAA124TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a003I15_T7.
AM388605.1:57-76
TCACATTTTGATTTGATTTTGAGNNNNGAA57TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a010H13_T7.
AM390061.1:96-115
ANNNATTTTGATTTGATTTTGAGCCATGAA96TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a010N15_T7.
AM390141.1:107-126
TCACATTTTGATTTGATTTTGAGCCATGAA107TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a017D12_T7.
AM391471.1:97-116
ANNNATTTTGATTTGATTTTGAGCCATGAA97TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a019M13_T7.
AM392039.1:87-106
NNNNATTTTGATTTGATTTTGAGCCATGAA87TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a020F09_T7.
AM392152.1:102-121
TCACATTTTGATTTGATTTTGAGCCATGAA102TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
Brassica oleracea var. viridis mRNA, clone: KALE-057D17, 5' end sequence.
DK477421.1:233-252
CAACATTTTGATTTGATTTTGAGCCATGAA233TGCTTTAGCCGCAACGAACAGGAACTTCCGTCATGCCTCGCGAATCCTCG
Brassica oleracea var. viridis mRNA, clone: KALE-099I24, 5' end sequence.
DK493629.1:226-245
CAACATTTTGATTTGATTTTGAGCCATGAA226TGCTTTAGCCGCAACGAACAGGAACTTCCGTCATGCCTCGCGAATCCTCG
Brassica oleracea var. viridis mRNA, clone: KALE-144N16, 5' end sequence.
DK510936.1:252-271
CAACATTTTGATTTGATTTTGAGCCATGAA252TGCTTTAGCCGCAACGAACAGGAACTTCCGTCATGCCTCGCGAATCCTCG
47RDOAH_UP_021_G09_14AUG2004_067 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
DY027434.1:115-134
TCACATTTTGATTTGATTTTGAGCCATGAA115TGCTTTAGCCGCAACGAACAGGAACTTCCGTCATGCCTCACGAATCCTCG
13JKBNM2_UP_010_B04_08DEC2003_030 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
ES263986.1:203-222
TCACATTTTGATTTGATTTTGAGCCATGAA203TGCTTTAGCCGCAACGAACAGGAACTTCCGTCATGCCTCACGAATCCTCG
BNARO6GH_T3_012_C12_07DEC2006_092 Brassica napus BNARO6GH Brassica napus cDNA 5', mRNA sequence.
ES909825.1:93-112
TCACATTTTGATTTGATTTTGAGCCATGAA93TGCTTTAGCCGCAACGAACAGGAACTTCCGTCATGCCTCACGAATCCTCG
0121056 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115744.1:155-174
TCACACTTTGATTTGATTTTGAGCCATGAA155TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
0107255 Brassica napus Damaged cotyledons Brassica napus cDNA, mRNA sequence.
EV225329.1:125-144
TCACACTTTGATTTGATTTTGAGCCATGAA125TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
BR006292 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-060B01 5', mRNA sequence.
EX021648.1:28-47
TTTTTGGATTTGATTTTGAGCCATGAA28TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
BR008876 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-005F03 5', mRNA sequence.
EX024232.1:72-91
CACACTTTGATNCTGNTTTTGAGCCATGAA72TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
BR021993 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-023G11 5', mRNA sequence.
EX037349.1:106-125
TCACACTTTGATTTGATTTTGAGCCATGAA106TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
BR083916 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-053F01 5', mRNA sequence.
EX097626.1:105-124
TCACACTTTGATTTGATTTTGAGCCATGAA105TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
BR083994 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-054E10 5', mRNA sequence.
EX097704.1:107-126
TCACACTTTGATTTGATTTTGAGCCATGAA107TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
BR100512 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-113H01 5', mRNA sequence.
EX114222.1:102-121
TCACACTTTGATTTGATTTTGAGCCATGAA102TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
BR114841 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-08H04 5', mRNA sequence.
EX131011.1:74-93
TCACACTTTGATTTGATTTTGAGCCATGAA74TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
BR117415 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-35E11 5', mRNA sequence.
EX133585.1:76-95
TCACACTTTGATTTGATTTTGAGCCATGAA76TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
BR118298 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-46E10 5', mRNA sequence.
EX134468.1:71-90
TCACACTTTGATTTGATTTTGAGCCATGAA71TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
BR120845 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-78H09 5', mRNA sequence.
EX137015.1:59-78
TCACACTTTGATTTGATTTTGAGCCATGAA59TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
BR121100 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-82D04 5', mRNA sequence.
EX137270.1:81-100
TCACACTTTGATTTGATTTTGAGCCATGAA81TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
BR121284 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-84G06 5', mRNA sequence.
EX137454.1:81-100
TCACACTTTGATTTGATTTTGAGCCATGAA81TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
BR121530 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-88A11 5', mRNA sequence.
EX137700.1:130-149
TCACACTTTGATTTGATTTTGAGCCATGAA130TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
RR4EQ55TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD556898.1:144-163
CACACTTTTGATTTGATAGTGAGCCATGAA144TGCTTTAGCCGCAACGAACAGGAACTTCCGTCACGCATCTCGGATCCTCG
BN18DYSC_UP_109_D04_31MAR2008_026 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG562038.1:216-235
TCACACTTTGATTTGATTTTGAGCCATGAA216TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF04I20, 5'-end sequence.
FY064979.1:106-125
TCACACTTTGATTTGATTTTGAGCCATGAA106TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
Raphanus sativus mRNA, clone: RSCF08L07, 5' end sequence.
FY430040.1:21-40
TAATTGCGTTTAGCCATGAA21TGCTTTAGCCGCAACGAACAGGAACTTCCGCCACGCGTCTCGGATCCTCG
Raphanus sativus mRNA, clone: RSCF09K13, 5' end sequence.
FY430281.1:56-75
TTCGATAGTAAATTGCGTTTTAGCCATGAA56TGCTTTAGCCGCAACGAACAGGAACTTCCGCCACGCGTCTCGGATCCTCG
Raphanus sativus mRNA, clone: RSCF12O14, 5' end sequence.
FY431096.1:88-107
CACACTTTTGATTCGATAGTGAGCCATGAA88TGCTTTAGCCGCAACGAACAGGAACTTCCGTCACGCATCTCGGATCCTCG
Raphanus sativus mRNA, clone: RSCL19I16, 5' end sequence.
FY439400.1:86-105
CACACTTTTGATTCGATAGTGAGCCATGAA86TGCTTTAGCCGCAACGAACAGGAACTTCCGTCACGCATCTCGGATCCTCG
Raphanus sativus mRNA, clone: RSCS15G06, 5' end sequence.
FY451220.1:68-87
TTCGATAGTAAATTGCGTTTTAGCCATGAA68TGCTTTAGCCGCAACGAACAGGAACTTCCGCCACGCGTCTCGGATCCTCG
Raphanus sativus mRNA, clone: RSCS17C18, 5' end sequence.
FY451856.1:68-87
TTCGATAGTAAATTGCGTTTTAGCCATGAA68TGCTTTAGCCGCAACGAACAGGAACTTCCGCCACGCGTCTCGGATCCTCG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_14382.
FX736530.1:156-175
ATCACTTTTGATTTGCGTTTTAGCCATGAA156TGCTTTAGCCGCAACGAACAGGAACTTCCGCCACGCGTCTCGGATCCTCG
Brassica napus gdh2 mRNA for glutamate dehydrogenase, complete cds.
AB066298.1:118-137
TCACATTTTGATTTGATTTTGAGCCATGAA118TGCTTTAGCCGCAACGAACAGGAACTTCCGTCATGCCTCACGAATCCTCG
Brassica napus gdh2 gene for glutamate dehydrogenase 2, complete cds.
AB236412.1:1697-1716
AAAAAAAAACTCCCATTGAGCCATCATGAA1697TGCTTTAGCCGCAACGAACAGGAACTTCCGTCATGCCTCACGAATCCTCG
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:1191829-1191848
TCACACTTTGATTTGATTTTGAGCCATGAA1191829TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
Brassica napus genome assembly, chromosome: A02.
HG994356.1:1087824-1087843
TCACACTTTGATTTGATTTTGAGCCATGAA1087824TGCTTTAGCCGCAACGAACAGGAACTTCCGCCATGCCTCACGAATCCTCG
Brassica napus genome assembly, chromosome: C02.
HG994366.1:1844866-1844885
TCACATTTTGATTTGATTTTGAGCCATGAA1844866TGCTTTAGCCGCAACGAACAGGAACTTCCGTCATGCCTCACGAATCCTCG
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:1953977-1953996
CAACATTTTGATTTGATTTTGAGCCATGAA1953977TGCTTTAGCCGCAACGAACAGGAACTTCCGTCATGCCTCGCGAATCCTCG
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:30543998-30544017
CACACTTTTGATTCGATAGTGAGCCATGAA30543998TGCTTTAGCCGCAACGAACAGGAACTTCCGTCACGCATCTCGGATCCTCG
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:5396747-5396766
ATCACTTTTGATTTGCGTTTTAGCCATGAA5396747TGCTTTAGCCGCAACGAACAGGAACTTCCGCCACGCGTCTCGGATCCTCG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_9441.
FX659405.1:1209-1228
CGAGGATCCGAGATGCGTGACGGAAGTTCC1209TGTTCGTTGCGGCTAAAGCATTCATGGCTCACTATCGAATCAAAAGTGTG
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:13074138-13074157
CGAGGATCCGAGATGCGTGACGGAAGTTCC13074138TGTTCGTTGCGGCTAAAGCATTCATGGCTCACTATCGAATCAAAAGTGTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGCTTTAGCCGCAACGAACA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCTTTAGCCGCAACGAACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.656 | 2.647 | search_plus_done; http://172.18.8.135:50400/match?q=TGCTTTAGCCGCAACGAACA&k=0&no_gap=0&offset=0&limit=50
2.727 | 0.072 | search_minus_done; http://172.18.8.135:50400/match?q=TGTTCGTTGCGGCTAAAGCA&k=0&no_gap=0&offset=0&limit=1
2.729 | 0.001 | cgi_end;

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