GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-19 15:55:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Acipenser ruthenus genome assembly, chromosome: 15.
OV737696.1:31114794-31114813
TACCATAAAACAAAACCATTGTCTTCTGTG31114794TGCTTTGAAGGCTTTTCCTCATAGCTTGATGAGTTCTATGTGGGTTGGGT
Acipenser ruthenus genome assembly, chromosome: 18.
OV737699.1:28770612-28770631
TACCATAAAACAAAACCATTGTCTTCTGTG28770612TGCTTTGAAGGCTTTTCCTCATAGCTTGATGAGTTCTATGTGGGTTGGGT
Acipenser ruthenus genome assembly, chromosome: 18.
OV754626.1:28525513-28525532
TACCATAAAACAAAACCATTGTCTTCTGTG28525513TGCTTTGAAGGCTTTTCCTCATAGCTTGATGAGTTCTATGTGGGTTGGGT
Acipenser ruthenus genome assembly, chromosome: 15.
OV754684.1:31198929-31198948
TACCATAAAACAAAACCATTGTCTTCTGTG31198929TGCTTTGAAGGCTTTTCCTCATAGCTTGATGAGTTCTATGTGGGTTGGGT
C05141A11SK FerrChloL1 Citrus clementina cDNA clone C05141A11, mRNA sequence.
CX296444.1:360-379
GCACTCATTCCCACGTTTGTTTTGCTCTCT360TGCTTTGAAGGCTTTTCCTCCATCGAACATCTCACTTTCCCCTTCACTGC
UCRPT01_5_020_E03_T7 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_020_T7_E03, mRNA sequence.
CX545217.1:392-411
GCACTCATTCCCACGTTTGTTTTGCTCTCT392TGCTTTGAAGGCTTTTCCTCCATCGAACATCTCACTTTCCCCTTCACTGC
Citrus unshiu mRNA, clone: GSA1108, 5'-end sequence, expressed in seedling.
DC890929.1:380-399
GCACTCATTCCCACGTTTGTTTTGCTTTCT380TGCTTTGAAGGCTTTTCCTCCATCGAACATCTCACTTTCCCCTTCACTGC
KumquatLateLib_FIII3-D07.g Fortunella margarita adult leaf subtraction library Citrus japonica var. margarita cDNA, mRNA sequence.
GW690627.1:368-387
GCACTCATTCCCACGTTAGTTATGCTCTCT368TGCTTTGAAGGCTTTTCCTCCATCGAACATCTCACTTTCCCCTTCACTGC
Prunus dulcis DNA, unplaced-scaffold_466.
AP020803.1:22766-22785
CTTCCCCTTATTCTTCTTAGATTGATCCTT22766TGCTTTGAAGGCTTTTCCTCAACGATATTGGCATTGGCTTCTAAGGCAGA
Ailanthus altissima genome assembly, chromosome: 1.
OX327683.1:31743707-31743726
GCACTCATTCCCATGCTTGAGTTGCTTTCC31743707TGCTTTGAAGGCTTTTCCTCAACGGAACATCTCACTTTCCCCCCCTCATT
Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:25206341-25206360
GCACTCATTCCCACGTTTGTTTTGCTCTCT25206341TGCTTTGAAGGCTTTTCCTCCATCGAACATCTCACTTTCCCCTTCACTGC
Drosophila simulans isolate dsim_28_M0 chromosome X.
CP121867.1:19871105-19871124
CTTGGGGGCAGTGGTGCAACTCCACCCGAC19871105TGCTTTGAAGGCTTTTCCTCGCCCCCAATTGTATTGGTGGCCGTGCAGGA
Drosophila simulans isolate dsim_29_F0 chromosome X.
CP121879.1:19871105-19871124
CTTGGGGGCAGTGGTGCAACTCCACCCGAC19871105TGCTTTGAAGGCTTTTCCTCGCCCCCAATTGTATTGGTGGCCGTGCAGGA
Drosophila simulans isolate dsim_29_M0 chromosome X.
CP121885.1:19871105-19871124
CTTGGGGGCAGTGGTGCAACTCCACCCGAC19871105TGCTTTGAAGGCTTTTCCTCGCCCCCAATTGTATTGGTGGCCGTGCAGGA
Drosophila simulans isolate dsim_31_F0 chromosome X.
CP121891.1:19871105-19871124
CTTGGGGGCAGTGGTGCAACTCCACCCGAC19871105TGCTTTGAAGGCTTTTCCTCGCCCCCAATTGTATTGGTGGCCGTGCAGGA
Drosophila simulans isolate dsim_31_F0 chromosome X.
CP121897.1:19871105-19871124
CTTGGGGGCAGTGGTGCAACTCCACCCGAC19871105TGCTTTGAAGGCTTTTCCTCGCCCCCAATTGTATTGGTGGCCGTGCAGGA
Drosophila simulans isolate dsim_31_M0 chromosome X.
CP121903.1:19871105-19871124
CTTGGGGGCAGTGGTGCAACTCCACCCGAC19871105TGCTTTGAAGGCTTTTCCTCGCCCCCAATTGTATTGGTGGCCGTGCAGGA
Drosophila simulans isolate dsim_25_F0 chromosome X.
CP122186.1:19871105-19871124
CTTGGGGGCAGTGGTGCAACTCCACCCGAC19871105TGCTTTGAAGGCTTTTCCTCGCCCCCAATTGTATTGGTGGCCGTGCAGGA
Drosophila simulans isolate dsim_25_M0 chromosome X.
CP122198.1:19871105-19871124
CTTGGGGGCAGTGGTGCAACTCCACCCGAC19871105TGCTTTGAAGGCTTTTCCTCGCCCCCAATTGTATTGGTGGCCGTGCAGGA
Drosophila simulans isolate dsim_26_F0 chromosome X.
CP122210.1:19871105-19871124
CTTGGGGGCAGTGGTGCAACTCCACCCGAC19871105TGCTTTGAAGGCTTTTCCTCGCCCCCAATTGTATTGGTGGCCGTGCAGGA
Drosophila simulans isolate dsim_26_M0 chromosome X.
CP122216.1:19871105-19871124
CTTGGGGGCAGTGGTGCAACTCCACCCGAC19871105TGCTTTGAAGGCTTTTCCTCGCCCCCAATTGTATTGGTGGCCGTGCAGGA
Drosophila simulans isolate dsim_27_F0 chromosome X.
CP122222.1:19871105-19871124
CTTGGGGGCAGTGGTGCAACTCCACCCGAC19871105TGCTTTGAAGGCTTTTCCTCGCCCCCAATTGTATTGGTGGCCGTGCAGGA
Drosophila simulans isolate dsim_27_M0 chromosome X.
CP122234.1:19871105-19871124
CTTGGGGGCAGTGGTGCAACTCCACCCGAC19871105TGCTTTGAAGGCTTTTCCTCGCCCCCAATTGTATTGGTGGCCGTGCAGGA
Hydraecia micacea genome assembly, chromosome: Z.
OU611774.1:10239711-10239730
ATAATGAGATTCATTACTTCCGTGGCCATT10239711TGCTTTGAAGGCTTTTCCTCTCAAATCGGCACTATTTCAAACTAGCTTAA
Acholoe squamosa genome assembly, chromosome: 5.
OX439039.1:53382494-53382513
TTAGAAGGAACAGAAGGACTAGGGGAGACC53382494TGCTTTGAAGGCTTTTCCTCCAGTGGGTCAGTAGCAGGGGCCTAGAACTG
USDA-FP_00235 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00235 5', mRNA sequence.
BQ623144.1:207-226
GCAGTGAAGGGGAAAGTGAGATGTTCGATG207GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
USDA-FP_00883 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00883 5', mRNA sequence.
BQ623792.1:176-195
GCAGTGAAGGGGAAAGTGAGATGTTCGATG176GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
USDA-FP_119000-514 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E04 5', mRNA sequence.
CF504026.1:133-152
GCAGTGAAGGGGAAAGTGAGATGTTCCATG133GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
USDA-FP_119000-595 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H10 5', mRNA sequence.
CF504107.1:135-154
GCAGTGAAGGGGAAAGTGAGATGTTCGATG135GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
USDA-FP_123000-218 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-5_G05 5', mRNA sequence.
CF507717.1:198-217
GCAGTGAAGGGGAAAGTGAGATGTTCGATG198GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAAC
USDA-FP_3961 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE19E02 5', mRNA sequence.
CK665486.1:163-182
GCAGTGAAGGGGAAAGTGAGATGTTCGATG163GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
USDA-FP_5140 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE42A10 5', mRNA sequence.
CK701879.1:162-181
GCAGTGAAGGGGAAAGTGAGATGTTCGATG162GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
USDA-FP_5668 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE52F12 5', mRNA sequence.
CK702406.1:162-181
GCAGTGAAGGGGAAAGTGAGATGTTCGATG162GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
USDA-FP_6761 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68B12 5', mRNA sequence.
CK739939.1:105-124
GCAGTGAAGGGGAAAGTGAGATGTTCGATG105GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
CGF1004514_B07 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_B07 5', mRNA sequence.
CK937107.1:208-227
GCAGTGAAGGGGAAAGTGAGATGTTCGATG208GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
CGF1004746_H02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_H02 5', mRNA sequence.
CK939692.1:253-272
GCAGTGAAGGGGAAAGTGAGATGTTCGATG253GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
C07004E08SK SaltLeaf1 Citrus clementina cDNA clone C07004E08, mRNA sequence.
CX299966.1:223-242
GCAGTGAAGGGGAAAGTGAGATGTTCGATG223GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
UCRPT01_5_020_E03_T3 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_020_T3_E03, mRNA sequence.
CX545216.1:163-182
GCAGTGAAGGGGAAAGTGAGATGTTCGATG163GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAATGC
Citrus limon mRNA, clone: LLL0827, 5'-end sequence, expressed in leaf.
DC892012.1:221-240
GCAGTGAAGGGGAAAGTGAGATGTTCGATG221GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
KN0AAP6YK24FM1 Fruit-TF Citrus clementina cDNA 5', mRNA sequence.
DY270465.1:203-222
GCAGTGAAGGGGAAAGTGAGATGTTCGATG203GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
CHUL3720.b1_O18.ab1 CHU(LMS) puzzle sunflower Helianthus paradoxus cDNA clone CHUL3720, mRNA sequence.
EL475757.1:611-630
CGGATACGTCAGCGATCTCTGCAGGCATTT611GAGGAAAAGCCTTCAAAGCACTGTTGAATCAGTTCGTGAACACGAGTTAT
Volcani_8_06_H10 Volcani08 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
EX449374.1:244-263
GCAGTGAAGGGGAAAGTGAGATGTTCGATG244GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
CS00-C1-101-043-E04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY662379.1:190-209
GCAGTGAAGGGGAAAGTGAGATGTTCGATG190GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
CS00-C1-102-020-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY674261.1:323-342
GCAGTGAAGGGGAAAGTGAGATGTTCGATG323GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
CS00-C2-003-034-B08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY686069.1:175-194
GCAGTGAAGGGGAAAGTGAGATGTTCGATG175GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
CS00-C2-003-031-F12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY686990.1:279-298
GCAGTGAAGGGGAAAGTGAGATGTTCGATG279GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
CS00-C3-703-036-H07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY725622.1:404-423
GCAGTGAAGGGGAAAGTGAGATGTTCGATG404GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
CS00-C3-705-005-G02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY735838.1:170-189
GCAGTGAAGGGGAAAGTGAGATGTTCGATG170GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
CS13-C1-001-030-B02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
EY758006.1:80-99
GCAGTGAAGGGGAAAGTGAGATGTTCGATG80GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
CR05-C1-103-043-H10-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY778348.1:208-227
GCAGTGAAGGGGAAAGTGAGATGTTCGATG208GAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGC
Ailanthus altissima genome assembly, chromosome: 2.
OX327684.1:27039896-27039915
GCAATAAAGGGGAAAGTGAGATGTTCCGTT27039896GAGGAAAAGCCTTCAAAGCAGGAAAGCAACTCAAGCATGGGAATGAGCGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGCTTTGAAGGCTTTTCCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCTTTGAAGGCTTTTCCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.414 | 0.405 | search_plus_done; http://172.18.8.135:50400/match?q=TGCTTTGAAGGCTTTTCCTC&k=0&no_gap=0&offset=0&limit=50
1.924 | 1.510 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGAAAAGCCTTCAAAGCA&k=0&no_gap=0&offset=0&limit=25
1.942 | 0.018 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).